DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4328 and lim-6

DIOPT Version :10

Sequence 1:NP_648567.2 Gene:CG4328 / 39405 FlyBaseID:FBgn0036274 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_001256980.1 Gene:lim-6 / 180459 WormBaseID:WBGene00002988 Length:316 Species:Caenorhabditis elegans


Alignment Length:329 Identity:121/329 - (36%)
Similarity:174/329 - (52%) Gaps:46/329 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 CNRITLGECSLNGM----DGFATPAAPPSASNTPQAPLGMASNSGMGMELGLAMASPQLSQCAHC 202
            |:.:.|.:.||..:    || :||....:.|:|.:..|                       |:.|
 Worm     5 CDIVDLDQPSLGTVISIKDG-STPTDISTTSSTTEDKL-----------------------CSGC 45

  Fly   203 CQPICDRYIMRVVENSFHEGCLKCTACSLHL--VHSCYAREGKLYCRVDYERLYIRNHCLGCGLK 265
            ...|.||||.||:|:|:||.||:|:.|.|.|  ...|::|.|.:||..|::.|| ...|..|...
 Worm    46 GCLIKDRYIYRVMEDSYHESCLRCSCCQLSLSSFKKCFSRHGNIYCEHDHQMLY-GKRCRRCMTL 109

  Fly   266 IAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFDYEK--EVEMLQGYDFYGD 328
            :...::|.|.|...:|.:||:|..|......|::|.|..|::|||.||:.  ..:.:...|...:
 Worm   110 LLPTDIVHRVHFMYYHAQCFSCCSCQRPFNLGDEYHVFDGEVFCRNDYQSICNFQTISNPDPLME 174

  Fly   329 ELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDTGLSLRIVQVWFQNQR 393
            |:...::. |:.|||||||||.||||.||.:||.|.||.|||||.||.:||||:|:|||||||||
 Worm   175 EVVRSEIH-RKTPKRPRTILNAQQRRQFKTAFERSSKPSRKVREQLANETGLSVRVVQVWFQNQR 238

  Fly   394 AKVKKIQKK-------AKQEPPSKGAS-----DSQDSQESLDSSLATKIKDEAHSDSESQLESPY 446
            ||:||:.||       .|..|.|:|.|     .|.|.:||:.:..|.:::....|.....::..|
 Worm   239 AKIKKLNKKDSDSGDTFKHGPGSEGRSTEDIRSSDDEEESVINLDADEVETSETSSYTDPIQKLY 303

  Fly   447 STTS 450
            :.||
 Worm   304 NMTS 307

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4328NP_648567.2 LIM1_Lmx1b 199..251 CDD:188757 25/53 (47%)
LIM 259..313 CDD:413332 17/53 (32%)
COG5576 <332..439 CDD:227863 59/118 (50%)
HOX 341..393 CDD:197696 39/51 (76%)
lim-6NP_001256980.1 LIM 42..95 CDD:413332 24/52 (46%)
LIM 101..157 CDD:413332 17/55 (31%)
Homeodomain 187..243 CDD:459649 42/55 (76%)

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