Protein Alignment CG4328 and Lhx3

DIOPT Version :10

• Sequence 1: NP_648567.2
• Gene: CG4328 / 39405
• FlyBaseID: FBgn0036274
• Length: 544
• Species: Drosophila melanogaster
• Sequence 2: XP_038962056.2
• Gene: Lhx3 / 170671
• RGDID: 71078
• Length: 431
• Species: Rattus norvegicus
• Alignment Length: 324
• Identity: 98/324 - (30%)
• Similarity: 150/324 - (46%)
• Gaps: 72/324 - (22%)

  Fly   179 SNSGMGMELGLAMAS------PQLSQCAHCCQPICDRYIMRVVENSFHEGCLKCTACSLHLVHSC 237
            |....|.:|.||:.:      .::..||.|.|.|.||:|::.::..:|..||||:.|.:.|...|
  Rat    10 SRESAGGDLLLALLARRADLRREIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC 74

  Fly   238 YAREGKLYCRVDYERLYIRNHCLGCGLKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQ-YV 301
            ::|...:||:.|:.:.: ...|..|.|.|...::|.|..:.|:||.|||||||...|..|:: |:
  Rat    75 FSRGESVYCKDDFFKRF-GTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYL 138

  Fly   302 VKQGQLFCRFDYE----KEVEMLQGYDFYGDELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEV 362
            ::..:|.|:.|||    :|.|..                    .|||||.:..:|....|:::..
  Rat   139 MEDSRLVCKADYETAKQREAEAT--------------------AKRPRTTITAKQLETLKSAYNT 183

  Fly   363 SPKPCRKVRENLAKDTGLSLRIV-----------------------------QVWFQNQRAKVKK 398
            ||||.|.|||.|:.:|||.:|:|                             ||||||:|||.|:
  Rat   184 SPKPARHVREQLSSETGLDMRVVQVSARSRPPAPEGARAPREAGQPLTIPTPQVWFQNRRAKEKR 248

  Fly   399 IQKKAKQE---------PPSKGASDS-QDS-QESLDSSLATKIKDEAHSDSESQLESPYSTTSD 451
            ::|.|.::         ..|:|:|.| :|| ||..||.......||............||:..:
  Rat   249 LKKDAGRQRWGQYFRNMKRSRGSSKSDKDSIQEGQDSDAEVSFTDEPSMADMGTANGLYSSLGE 312

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG4328	NP_648567.2	LIM1_Lmx1b	199..251	CDD:188757	20/51 (39%)
		LIM	259..313	CDD:413332	21/54 (39%)
		COG5576	<332..439	CDD:227863	45/146 (31%)
		HOX	341..393	CDD:197696	27/80 (34%)
Lhx3	XP_038962056.2	None