DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4328 and Lhx9

DIOPT Version :10

Sequence 1:NP_648567.2 Gene:CG4328 / 39405 FlyBaseID:FBgn0036274 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_001036042.1 Gene:Lhx9 / 16876 MGIID:1316721 Length:397 Species:Mus musculus


Alignment Length:381 Identity:103/381 - (27%)
Similarity:146/381 - (38%) Gaps:118/381 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 RITLGECSLNGMDGFATPAAPPSASNTPQAPLGMASNSGMGMELGLAMASPQLSQCAHCCQPICD 208
            |:|.| ..|||.|....|.:|                           ..|.|  ||.|...|.|
Mouse    46 RLTKG-TQLNGRDAGMPPLSP---------------------------EKPAL--CAGCGGKISD 80

  Fly   209 RYIMRVVENSFHEGCLKCTACSLHLVH--SCYAREGKLYCRVDYERLYIRNHCLGCGLKIAADEL 271
            ||.:..|:..:|..||||..|.|.|..  :|:|::|.:||:.||.|.:....|..|.|.|:|.|:
Mouse    81 RYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEM 145

  Fly   272 VMRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFDYEKEVEMLQGYDFYGDELFPPKLD 336
            |||..::|:||.||.|..|...|..|:.:.:|...::||..:|   .:|||.       :||:|.
Mouse   146 VMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE---TLLQGE-------YPPQLS 200

  Fly   337 ----------------------------GRRGP-------------------------------- 341
                                        .|:.|                                
Mouse   201 YTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPSQ 265

  Fly   342 --KRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDTGLSLRIVQVWFQNQRAKVKKIQKKAK 404
              ||.||.....|.|..|:.|.::..|..|..:.||:.|||:.|::||||||.|||.::  ...:
Mouse   266 KTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR--NLLR 328

  Fly   405 QEPPSKGASDSQDSQESLDSSLATKIKDEAHSDSESQLESPYSTTSDGLTRMRCTI 460
            ||   .|..|..|         .|.:.....:||.:......:||...||....|:
Mouse   329 QE---NGGVDKAD---------GTSLPAPPSADSGALTPPGTATTLTDLTNPTVTV 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4328NP_648567.2 LIM1_Lmx1b 199..251 CDD:188757 22/53 (42%)
LIM 259..313 CDD:413332 21/53 (40%)
COG5576 <332..439 CDD:227863 37/168 (22%)
HOX 341..393 CDD:197696 23/85 (27%)
Lhx9NP_001036042.1 LIM1_Lhx2 61..124 CDD:188853 25/91 (27%)
LIM2_Lhx2_Lhx9 129..187 CDD:188763 21/57 (37%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 248..272 2/23 (9%)
Homeodomain 268..324 CDD:459649 25/55 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 330..365 9/46 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 378..397
Blue background indicates that the domain is not in the aligned region.

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