DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4328 and Lhx6

DIOPT Version :10

Sequence 1:NP_648567.2 Gene:CG4328 / 39405 FlyBaseID:FBgn0036274 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_032526.2 Gene:Lhx6 / 16874 MGIID:1306803 Length:392 Species:Mus musculus


Alignment Length:352 Identity:106/352 - (30%)
Similarity:162/352 - (46%) Gaps:41/352 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 PGTGTGMGTGTGHGPGPPNHTHCNRITLGECSLNGMDGFATPAAP--PSASNTPQAPLGMASNSG 182
            ||:|....|....|..||.....:...|.. :|:..:|.|:|..|  ||..:.|.|...:.| :|
Mouse    33 PGSGCKATTRCLEGTAPPAMAQSDAEALAG-ALDKDEGRASPCTPSTPSVCSPPSAASSVPS-AG 95

  Fly   183 MGMELGLAMASPQLSQCAHCCQPICDRYIMRVVENSFHEGCLKCTAC--SLHLVHSCYAREGKLY 245
            ..:             |:.|...|.|||:::|....:|..||:|:.|  ||...:|||.:..::|
Mouse    96 KNI-------------CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIY 147

  Fly   246 CRVDYERLYIRNHCLGCGLKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCR 310
            |::||...: ...|..||.:|.|.:.|.|...|.:||.||||..|...|..||::.:.:.::.||
Mouse   148 CKMDYFSRF-GTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCR 211

  Fly   311 FDYEKEVEMLQGYDFYGDEL-----FPPKLDGRRGP-KRPRTILNTQQRRAFKASFEVSPKPCRK 369
            ..|:..:|.|:.....|:.|     .|.:.|.:..| ||.||....:|.:..:|.|.....|..:
Mouse   212 IHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQ 276

  Fly   370 VRENLAKDTGLSLRIVQVWFQNQRAKVKKIQKKAKQEP-PSKGASDSQDSQESLDSSLATKIKDE 433
            ..:.||..||||.|::||||||.||:.|   |...|.| |..||..::         |.:.:.|:
Mouse   277 TLQKLADMTGLSRRVIQVWFQNCRARHK---KHTPQHPVPPSGAPPTR---------LPSALSDD 329

  Fly   434 AHSDSESQLESPYSTTSDGL--TRMRC 458
            .|....|..|.....|..|.  ::::|
Mouse   330 IHYSPFSSPERARMVTLHGYIESQVQC 356

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4328NP_648567.2 LIM1_Lmx1b 199..251 CDD:188757 20/53 (38%)
LIM 259..313 CDD:413332 20/53 (38%)
COG5576 <332..439 CDD:227863 36/108 (33%)
HOX 341..393 CDD:197696 22/52 (42%)
Lhx6NP_032526.2 LIM1_Lhx6 99..152 CDD:188766 19/52 (37%)
LIM2_Lhx6 160..214 CDD:188768 20/53 (38%)
Homeodomain 249..305 CDD:459649 24/58 (41%)

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