Protein Alignment CG4328 and Lhx1

DIOPT Version :10

• Sequence 1: NP_648567.2
• Gene: CG4328 / 39405
• FlyBaseID: FBgn0036274
• Length: 544
• Species: Drosophila melanogaster
• Sequence 2: NP_032524.1
• Gene: Lhx1 / 16869
• MGIID: 99783
• Length: 406
• Species: Mus musculus
• Alignment Length: 238
• Identity: 81/238 - (34%)
• Similarity: 127/238 - (53%)
• Gaps: 36/238 - (15%)

  Fly   199 CAHCCQPICDRYIMRVVENSFHEGCLKCTACSLHLVHSCYAREGKLYCRVDYERLYIRNHCLGCG 263
            ||.|.:||.||:::.|::.::|..|::|..|..:|...|::|||||||:.|:.|.: ...|.||.
Mouse     4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCF-GTKCAGCA 67

  Fly   264 LKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQ-YVVKQGQLFCRFDY------EKEVEMLQ 321
            ..|:..:||.|....||||.||.|::|...|..||: |::.:.:..|:.||      .||..:..
Mouse    68 QGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHS 132

  Fly   322 GYDFYGDELFP----PKLDGRR----------------------GPKR--PRTILNTQQRRAFKA 358
            ........|.|    |..|..:                      |.||  |||.:..:|....||
Mouse   133 ATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKA 197

  Fly   359 SFEVSPKPCRKVRENLAKDTGLSLRIVQVWFQNQRAKVKKIQK 401
            :|..:|||.|.:||.||::|||::|::||||||:|:|.:::::
Mouse   198 AFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQ 240

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG4328	NP_648567.2	LIM1_Lmx1b	199..251	CDD:188757	22/51 (43%)
		LIM	259..313	CDD:413332	20/54 (37%)
		COG5576	<332..439	CDD:227863	33/98 (34%)
		HOX	341..393	CDD:197696	27/53 (51%)
Lhx1	NP_032524.1	LIM1_Lhx1_Lhx5	4..55	CDD:188753	21/50 (42%)
		LIM2_Lhx1_Lhx5	63..118	CDD:188761	20/54 (37%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	128..189		10/60 (17%)
		Homeodomain	181..237	CDD:459649	27/55 (49%)
		dnaA	<263..>382	CDD:455861
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	294..372