Protein Alignment CG4328 and Lhx5

DIOPT Version :10

• Sequence 1: NP_648567.2
• Gene: CG4328 / 39405
• FlyBaseID: FBgn0036274
• Length: 544
• Species: Drosophila melanogaster
• Sequence 2: NP_620605.1
• Gene: Lhx5 / 124451
• RGDID: 71079
• Length: 402
• Species: Rattus norvegicus
• Alignment Length: 239
• Identity: 81/239 - (33%)
• Similarity: 128/239 - (53%)
• Gaps: 39/239 - (16%)

  Fly   199 CAHCCQPICDRYIMRVVENSFHEGCLKCTACSLHLVHSCYAREGKLYCRVDYERLYIRNHCLGCG 263
            ||.|.:||.||:::.|::.::|..|::|..|..:|...|::|||||||:.|:.|.: ...|.||.
  Rat     5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRF-GTKCAGCA 68

  Fly   264 LKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQ-YVVKQGQLFCRFDYEKEVEMLQG----- 322
            ..|:..:||.:....||||.||.|:||...|..||: ||:.:.:..|:.||.....:.:|
  Rat    69 QGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSSLKEGSLNSV 133

  Fly   323 ------------YDFYGDELFPPKLDG----------------RRGPKR--PRTILNTQQRRAFK 357
                        .|...|:  |.:.|.                ..|.||  |||.:..:|....|
  Rat   134 SSCTDRSLSPDLQDPLQDD--PKETDNSTSSDKETANNENEEQNSGTKRRGPRTTIKAKQLETLK 196

  Fly   358 ASFEVSPKPCRKVRENLAKDTGLSLRIVQVWFQNQRAKVKKIQK 401
            |:|..:|||.|.:||.||::|||::|::||||||:|:|.:::::
  Rat   197 AAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQ 240

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG4328	NP_648567.2	LIM1_Lmx1b	199..251	CDD:188757	22/51 (43%)
		LIM	259..313	CDD:413332	21/54 (39%)
		COG5576	<332..439	CDD:227863	32/88 (36%)
		HOX	341..393	CDD:197696	27/53 (51%)
Lhx5	NP_620605.1	LIM1_Lhx1_Lhx5	5..56	CDD:188753	21/50 (42%)
		LIM2_Lhx1_Lhx5	64..119	CDD:188761	21/54 (39%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	124..186		10/63 (16%)
		Homeodomain	181..237	CDD:459649	27/55 (49%)
		PHA03378	<247..>392	CDD:223065
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	298..402