DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4328 and Lmx1a

DIOPT Version :9

Sequence 1:NP_648567.2 Gene:CG4328 / 39405 FlyBaseID:FBgn0036274 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_387501.1 Gene:Lmx1a / 110648 MGIID:1888519 Length:382 Species:Mus musculus


Alignment Length:426 Identity:156/426 - (36%)
Similarity:220/426 - (51%) Gaps:102/426 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   155 MDGFATPAAPPSASNTPQAPLGMASNSGMGMELGLAMASPQLSQCAHCCQPICDRYIMRVVENSF 219
            :||........||..|      .||.|.:   ||.|: ||: |.|..|.:.|.||:::|:.::.:
Mouse     2 LDGLKMEENFQSAIET------SASFSSL---LGRAV-SPK-SVCEGCQRVISDRFLLRLNDSFW 55

  Fly   220 HEGCLKCTACSLHLVHSCYAREGKLYCRVDYERLYIRNHCLGCGLKIAADELVMRCHENVFHLKC 284
            ||.|::|.:|...|..:|:.|:.||||:..||:|:... |.||...||.:|.|||..::|:||.|
Mouse    56 HEQCVQCASCKEPLETTCFYRDKKLYCKYHYEKLFAVK-CGGCFEAIAPNEFVMRAQKSVYHLSC 119

  Fly   285 FACVVCGALLKKGEQYVVKQGQLFCRFDYEKEVEMLQGYDFYGDELFPPKL-------------- 335
            |.|.||...|:||:::|:|:|||.|:.|||||.|:|        .|..|..              
Mouse   120 FCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELL--------SLVSPAASDSGKSDDEESLCK 176

  Fly   336 -----------DGR--RGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDTGLSLRIVQV 387
                       ||:  :.||||||||.||||||||||||||.||||||||.||.:||||:|:|||
Mouse   177 SAHGAGKGASEDGKDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQV 241

  Fly   388 WFQNQRAKVKKIQKKAKQEPPSKGASDSQDSQESLDSSLATKIKDEAHSDSESQLESPYST---- 448
            ||||||||:||:.::.:|:         |..|::.....:.:.....::..|. :.:||:|    
Mouse   242 WFQNQRAKMKKLARRQQQQ---------QQDQQNTQRLTSAQTNGSGNAGMEG-IMNPYTTLPTP 296

  Fly   449 -----------TSD----GLTRMRCTIKDEQEQVPFNCMETNKENCNKNSEPILNTI-------- 490
                       .||    |||         ..|:|.:.|..      ..:||:.:.:        
Mouse   297 QQLLAIEQSVYNSDPFRQGLT---------PPQMPGDHMHP------YGAEPLFHDLDSDDTSLS 346

  Fly   491 -LGLSYATFQQLMGPFAQTPMINPIDRLYSMQSSYF 525
             ||..:....: .||. |:.:.||||.|||||:|||
Mouse   347 NLGDCFLATSE-AGPL-QSRVGNPIDHLYSMQNSYF 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4328NP_648567.2 LIM1_Lmx1b 199..251 CDD:188757 18/51 (35%)
LIM 259..313 CDD:295319 26/53 (49%)
COG5576 <332..439 CDD:227863 56/133 (42%)
HOX 341..393 CDD:197696 44/51 (86%)
Lmx1aNP_387501.1 LIM1_Lmx1a 35..86 CDD:188756 18/50 (36%)
LIM2_Lmx1a_Lmx1b 94..148 CDD:188764 26/53 (49%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 161..208 13/46 (28%)
Homeobox 198..252 CDD:365835 45/53 (85%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 252..286 5/43 (12%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 102 1.000 Domainoid score I6825
eggNOG 1 0.900 - - E33208_3BAC6
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001820
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_105498
Panther 1 1.100 - - O PTHR24208
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3844
SonicParanoid 1 1.000 - - X1182
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
109.800

Return to query results.
Submit another query.