DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4328 and Lmo1

DIOPT Version :10

Sequence 1:NP_648567.2 Gene:CG4328 / 39405 FlyBaseID:FBgn0036274 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_476514.1 Gene:Lmo1 / 109594 MGIID:102812 Length:156 Species:Mus musculus


Alignment Length:138 Identity:51/138 - (36%)
Similarity:76/138 - (55%) Gaps:8/138 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   186 ELGLAMAS--PQLSQ--CAHCCQPICDRYIMRVVENSFHEGCLKCTACSLHLVH---SCYAREGK 243
            |.|:.|.|  |:..|  ||.|.:.|.|||:::.::..:||.||||..|...|..   :.|.:...
Mouse     7 EDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANL 71

  Fly   244 LYCRVDYERLY-IRNHCLGCGLKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQL 307
            :.||.||.||: ...:|..|...|.|.|:|||..:||:||.||||.:|......|:::.:|...:
Mouse    72 ILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMI 136

  Fly   308 FCRFDYEK 315
            .|:.|||:
Mouse   137 LCQVDYEE 144

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4328NP_648567.2 LIM1_Lmx1b 199..251 CDD:188757 19/54 (35%)
LIM 259..313 CDD:413332 20/53 (38%)
COG5576 <332..439 CDD:227863
HOX 341..393 CDD:197696
Lmo1NP_476514.1 LIM1_LMO1_LMO3 24..78 CDD:188774 18/53 (34%)
LIM2_LMO1_LMO3 88..142 CDD:188775 20/53 (38%)
Blue background indicates that the domain is not in the aligned region.

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