DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4328 and Lmo3

DIOPT Version :10

Sequence 1:NP_648567.2 Gene:CG4328 / 39405 FlyBaseID:FBgn0036274 Length:544 Species:Drosophila melanogaster
Sequence 2:XP_036021636.1 Gene:Lmo3 / 109593 MGIID:102810 Length:172 Species:Mus musculus


Alignment Length:129 Identity:48/129 - (37%)
Similarity:74/129 - (57%) Gaps:5/129 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   199 CAHCCQPICDRYIMRVVENSFHEGCLKCTACSLHLVH---SCYAREGKLYCRVDYERLY-IRNHC 259
            ||.|.:.|.|||:::.::..:||.||||..|...|..   :.|.:...:.||.||.||: :..:|
Mouse    40 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNC 104

  Fly   260 LGCGLKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFDYEKEVEMLQGY 323
            ..|...|.|.|:|||..:||:||.||||.:|......|:::.:|...:.|:.|||:.: |.:||
Mouse   105 AACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGL-MKEGY 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4328NP_648567.2 LIM1_Lmx1b 199..251 CDD:188757 19/54 (35%)
LIM 259..313 CDD:413332 20/53 (38%)
COG5576 <332..439 CDD:227863
HOX 341..393 CDD:197696
Lmo3XP_036021636.1 LIM1_LMO1_LMO3 40..94 CDD:188774 18/53 (34%)
LIM2_LMO1_LMO3 104..158 CDD:188775 20/53 (38%)
Blue background indicates that the domain is not in the aligned region.

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