DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4328 and si:dkey-90l8.3

DIOPT Version :10

Sequence 1:NP_648567.2 Gene:CG4328 / 39405 FlyBaseID:FBgn0036274 Length:544 Species:Drosophila melanogaster
Sequence 2:XP_002663297.3 Gene:si:dkey-90l8.3 / 100330251 ZFINID:ZDB-GENE-081105-149 Length:156 Species:Danio rerio


Alignment Length:120 Identity:48/120 - (40%)
Similarity:66/120 - (55%) Gaps:8/120 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   199 CAHCCQPICDRYIMRVVENSFHEGCLKCTACSLHLVH---SCYAREGKLYCRVDYERLYIRNH-- 258
            ||.|...|.||:::..:|..:|..||||:.|...|..   :||::.|.:.||.||.||:  .|  
Zfish    16 CAGCGGRISDRFLLFSMERYWHSRCLKCSCCQAQLGEIGSTCYSKSGMILCRTDYIRLF--GHTG 78

  Fly   259 -CLGCGLKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFD 312
             |..||..|.|.|:|||...||:|||||:|..|...|..|:::....|.:||..|
Zfish    79 ACSACGQSIPASEMVMRAQGNVYHLKCFSCATCRNQLVPGDRFHYVNGTIFCEHD 133

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4328NP_648567.2 LIM1_Lmx1b 199..251 CDD:188757 20/54 (37%)
LIM 259..313 CDD:413332 24/54 (44%)
COG5576 <332..439 CDD:227863
HOX 341..393 CDD:197696
si:dkey-90l8.3XP_002663297.3 LIM1_LMO4 16..70 CDD:188772 19/53 (36%)
LIM2_LMO4 80..134 CDD:188773 24/54 (44%)
Blue background indicates that the domain is not in the aligned region.

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