DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sms and Srm

DIOPT Version :9

Sequence 1:NP_001287045.1 Gene:Sms / 39403 FlyBaseID:FBgn0036272 Length:458 Species:Drosophila melanogaster
Sequence 2:NP_033298.1 Gene:Srm / 20810 MGIID:102690 Length:302 Species:Mus musculus


Alignment Length:306 Identity:77/306 - (25%)
Similarity:129/306 - (42%) Gaps:62/306 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   137 IEYDIDKVVFEARSPFQKIQIMHSKTLGNMLLLDELQNIAESD-LIYTETL----MCRGVENYEG 196
            :...:::::...||.:|.|.:..|||.||:|:||.:....|.| ..|.|.:    :|   .:...
Mouse    33 LSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLC---SHPNP 94

  Fly   197 KEICILGGGDGALLYELLKE-NPKHVVMLEIDELVMQTCNKYL-NVICGDVLEKRKGDQYEIIVG 259
            :::.|:|||||.:|.|::|. :.:.||..||||.|::...|:| .:..|     ....:..:.||
Mouse    95 RKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIEVSKKFLPGMAVG-----FSSSKLTLHVG 154

  Fly   260 DCVEYLKKFIAEGRKFDYVFGDLTDIPITDAPEGETWDFIRTIFEHSF-----KVLKPDGKYLTH 319
            |..|::|:   ....||.:..|.:|      |.|..    .::|:.|:     ..||.||.....
Mouse   155 DGFEFMKQ---NQDAFDVIITDSSD------PMGPA----ESLFKESYYQLMKTALKEDGILCCQ 206

  Fly   320 GNGSTCK-VQLRLFEEQLNL---LRPKVKFTTTKAFVPSFMEEWLFYQVTFAXQAQVDSSAAAVA 380
            |.   |: :.|.|.:|..:.   |.|.|.:....  :|::...    |:.|            :.
Mouse   207 GE---CQWLHLDLIKEMRHFCKSLFPVVDYAYCS--IPTYPSG----QIGF------------ML 250

  Fly   381 TSSAPPTASHTPASHSISQEPGTVGEMLQLHSYTVTIHGAAVGVQE 426
            .|..|.|....|    :.|......|.:||..|...:|.||..:.|
Mouse   251 CSKNPSTNFREP----VQQLTQAQVEQMQLKYYNSDMHRAAFVLPE 292

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
SmsNP_001287045.1 AdoMet_MTases 137..362 CDD:302624 62/240 (26%)
SrmNP_033298.1 PLN02366 8..298 CDD:215208 77/306 (25%)