DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sms and sms

DIOPT Version :9

Sequence 1:NP_001287045.1 Gene:Sms / 39403 FlyBaseID:FBgn0036272 Length:458 Species:Drosophila melanogaster
Sequence 2:NP_001245351.1 Gene:sms / 100497747 XenbaseID:XB-GENE-953534 Length:366 Species:Xenopus tropicalis


Alignment Length:372 Identity:160/372 - (43%)
Similarity:223/372 - (59%) Gaps:24/372 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AAQTILFDFTLDKDKTADEEARLQVAKILRNELEQLFPQ---LELAYSMESPENGYFAVLHENKD 63
            |.|....||.|  ..|||       ...:..:|:.:|.:   .|..::.|  ::||.|.....|.
 Frog     3 AVQQNTLDFQL--SVTAD-------GNTIIKDLQPIFQEQGMTETVHAWE--DHGYLATYTGKKG 56

  Fly    64 TVITCRIFQHGLLTLNVEYFLPDGKEPSISFDTM-----RTMELILRQKFDSDRSKYLPPIKRGG 123
            :..|.||:.|||:.::|:  ..|..|...|...:     ..|:.||....  .:.|.||.|.||.
 Frog    57 SFATVRIYPHGLVLIDVQ--CRDEPEEKASVHKILSKIEEKMQEILHNSI--RQVKRLPAIVRGA 117

  Fly   124 YIDIYMTSSDERIIEYDIDKVVFEARSPFQKIQIMHSKTLGNMLLLDELQNIAESDLIYTETLMC 188
            .:|.|..::|.|::|||||::|:...||:|.|:|||||..||:|:|:...|:|||||.||:.:|.
 Frog   118 SVDRYWPTADGRLVEYDIDEIVYSKESPYQNIKIMHSKQFGNILILNGDVNLAESDLAYTQAIMG 182

  Fly   189 RGVENYEGKEICILGGGDGALLYELLKENPKHVVMLEIDELVMQTCNKYLNVICGDVLEKRKGDQ 253
            .|.|:|.|||:.|||||||.:||||:|.|||.|.|:|||::|:..|.|::...|||||:..|||.
 Frog   183 SGKEDYCGKEVLILGGGDGGILYELVKLNPKMVTMVEIDQMVIDGCRKHMRKTCGDVLDNLKGDC 247

  Fly   254 YEIIVGDCVEYLKKFIAEGRKFDYVFGDLTDIPITDAPEGE-TWDFIRTIFEHSFKVLKPDGKYL 317
            |:::|.|||..||.:..|||.||||..|||.:||:.:||.: ||:|:|.|.:.|.||||.||||.
 Frog   248 YQVLVEDCVPVLKMYAKEGRTFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKEDGKYF 312

  Fly   318 THGNGSTCKVQLRLFEEQLNLLRPKVKFTTTKAFVPSFMEEWLFYQV 364
            |.||.......|.|:|||||:|...|:|:.....|||:||.|:||.:
 Frog   313 TQGNCVNLTEALTLYEEQLNMLSCPVQFSKEVVCVPSYMELWVFYTI 359

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmsNP_001287045.1 AdoMet_MTases 137..362 CDD:302624 119/225 (53%)
smsNP_001245351.1 SpmSyn_N 21..116 CDD:375444 25/100 (25%)
Spermine_synt_N 122..171 CDD:375104 23/48 (48%)
AdoMet_MTases 174..360 CDD:388410 97/186 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 199 1.000 Domainoid score I3017
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H88709
Inparanoid 1 1.050 284 1.000 Inparanoid score I2798
OMA 1 1.010 - - QHG52515
OrthoDB 1 1.010 - - D1243182at2759
OrthoFinder 1 1.000 - - FOG0007845
OrthoInspector 1 1.000 - - oto105019
Panther 1 1.100 - - LDO PTHR46315
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5650
SonicParanoid 1 1.000 - - X5802
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

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