DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsen54 and tsen54

DIOPT Version :10

Sequence 1:NP_648559.1 Gene:Tsen54 / 39397 FlyBaseID:FBgn0036266 Length:383 Species:Drosophila melanogaster
Sequence 2:XP_031749813.1 Gene:tsen54 / 100124961 XenbaseID:XB-GENE-969117 Length:528 Species:Xenopus tropicalis


Alignment Length:161 Identity:61/161 - (37%)
Similarity:92/161 - (57%) Gaps:12/161 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 LSAQELIAHRHTEFEPP--SGGLKRTKNEGTAAEVEELK--RAQEYLRAQLSVPRIERLGGRALA 80
            ||.:||:|.|..|...|  |.|.|....:|:.|:.|:|:  ||:::  ..|...|:||||.....
 Frog     2 LSPEELLAARSREKSIPQRSHGQKDFLPDGSEAQNEKLRLCRAEQW--ELLKEERVERLGSLVKG 64

  Fly    81 IWNEEQQVAEVKRKDGKF-ENFGYSEQGKLYLEYYEAMFLLEVGRLQLEYCGLVVSIEQAYVLLL 144
            ||..::.:.|:....||| :..|::.|||..|...||::|||.|.:||.|...::|:::||..||
 Frog    65 IWRPKEDLVELTSPAGKFWQTMGFTHQGKQCLLPEEAVYLLECGAVQLFYHDSLLSVQEAYERLL 129

  Fly   145 GELESERY--TNYLVYSALSRSGYIVVKHVP 173
            |:   :|:  .:|.|||.|.|.||||.:..|
 Frog   130 GD---QRFPVLHYQVYSHLKRLGYIVTRFDP 157

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsen54NP_648559.1 tRNA_int_end_N2 66..129 CDD:463754 25/63 (40%)
tsen54XP_031749813.1 tRNA_int_end_N2 47..114 CDD:463754 25/68 (37%)
tRNA_int_end_N2 <100..>152 CDD:480673 24/54 (44%)

Return to query results.
Submit another query.