DRSC/TRiP Functional Genomics Resources

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Protein Alignment thoc6 and Thoc6

DIOPT Version :9

Sequence 1:NP_001261750.1 Gene:thoc6 / 39394 FlyBaseID:FBgn0036263 Length:350 Species:Drosophila melanogaster
Sequence 2:NP_077360.2 Gene:Thoc6 / 79227 RGDID:708553 Length:341 Species:Rattus norvegicus


Alignment Length:318 Identity:92/318 - (28%)
Similarity:157/318 - (49%) Gaps:10/318 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LKRAYNNVLAQAISGSKQYLFAGNLFGDIFVLRIK-ELDKGSEEPPGKLKIFPQGSDVDINYLAF 69
            |:|.:..:.:|::|...::|.|||.:|.|.:..:. .|...::|...|..:.....|..:..:..
  Rat    20 LQRLHMTIFSQSVSPCGKFLAAGNNYGQIAIFSLSAALSSEAKEESKKPMVTFHAHDGPVYSMVS 84

  Fly    70 HRDFLIVGAVGLIYGLEWNEEEESLATKRSWEVKIPMQVDAVEVPDVNSMWL-DSENSILFAGCG 133
            ....|:....|.:.|..|.|..:. ..|..|..:.|.:. ::|||::|::.| ..|||::.|| |
  Rat    85 TDRHLLSAGDGEVKGWLWAEILKK-GCKELWRRQPPYRT-SLEVPEINALLLVPKENSLILAG-G 146

  Fly   134 DGVIYQVSLEDGRIQREYRGHTDYVHSV-VGNANGQIFSGAEDGTVRVWSTKQQQHTSMLEPYKN 197
            |..::.:.||.|...|..||||||:|.: :...:.::.||.|||.||:|..:..:....:|.||:
  Rat   147 DCQLHTMDLETGTFTRALRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRIAKEVQTIEVYKH 211

  Fly   198 PNLLRPDWGKWIGAVAVNEDWLLCGGGPKASIFHLRSMESTCVFSFPGRVHLCDFVDDCVLIGGE 262
            ....||..|:|||.:|.:.||::|||||..:::||||...|.||..........|..|.:|..|:
  Rat   212 EECSRPHNGRWIGCLATDSDWMVCGGGPALTLWHLRSSTPTTVFPIRAPQKHVTFYQDLILSAGQ 276

  Fly   263 HNHVQSYTLNGVLQANIPVEHTACYSAVWQTSP----IKFISIAGFSNKLHILKDFRF 316
            ...|..:.|:|.|:|.:|.......|......|    .|.::.:|.|.::.:..:..:
  Rat   277 GCCVNHWQLSGELKAQVPGSSPGLLSLSLNQQPAAPECKVLTASGNSCRVDVFTNLGY 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
thoc6NP_001261750.1 WD40 <45..325 CDD:225201 81/278 (29%)
WD40 <115..265 CDD:295369 56/151 (37%)
WD40 repeat 159..194 CDD:293791 9/35 (26%)
WD40 repeat 209..244 CDD:293791 17/34 (50%)
WD40 repeat 249..280 CDD:293791 9/30 (30%)
WD40 repeat 286..320 CDD:293791 5/35 (14%)
Thoc6NP_077360.2 WD 1 22..61 10/38 (26%)
WD40 27..285 CDD:421866 80/260 (31%)
WD40 repeat 28..74 CDD:293791 11/45 (24%)
WD 2 74..112 6/38 (16%)
WD40 repeat 79..115 CDD:293791 6/36 (17%)
WD 3 124..163 15/39 (38%)
WD40 repeat 130..165 CDD:293791 13/35 (37%)
WD 4 166..205 14/38 (37%)
WD40 repeat 171..210 CDD:293791 10/38 (26%)
WD 5 215..254 19/38 (50%)
WD40 repeat 218..260 CDD:293791 19/41 (46%)
WD 6 256..293 9/36 (25%)
WD 7 295..339 5/40 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 73 1.000 Domainoid score I9080
eggNOG 1 0.900 - - E1_KOG0649
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H11533
Inparanoid 1 1.050 146 1.000 Inparanoid score I4321
OMA 1 1.010 - - QHG50131
OrthoDB 1 1.010 - - D447320at33208
OrthoFinder 1 1.000 - - FOG0007004
OrthoInspector 1 1.000 - - oto95607
orthoMCL 1 0.900 - - OOG6_106439
Panther 1 1.100 - - LDO PTHR44411
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X5889
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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