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Protein Alignment CAH2 and Ca5a

DIOPT Version :9

Sequence 1:	NP_648555.1	Gene:	CAH2 / 39390	FlyBaseID:	FBgn0027843	Length:	335	Species:	Drosophila melanogaster
Sequence 2:	NP_062166.1	Gene:	Ca5a / 54233	RGDID:	2243	Length:	304	Species:	Rattus norvegicus

Alignment Length:	322	Identity:	93/322 - (28%)
Similarity:	154/322 - (47%)	Gaps:	76/322 - (23%)

- Green bases have known domain annotations that are detailed below.

  Fly     8 PFAIV--IAPILICASLVLAQDFGYEGRHGPEHW------SEDYARCS-------------GKHQ 51
            |.||:  :.|  :||:             .|:||      :|.::.|:             |..|
  Rat    14 PLAILRHMGP--LCAT-------------RPQHWRFQHSYAEKHSNCARHPLWTGPVSSPGGTQQ 63

  Fly    52 SPINIDQVSAVEKKFPKLEFFNFKVVPDNLQ--------MTNNGHTVLVKMSYNEDEIPSVRGGP 108
            |||||....:|         ::.|:.|..:.        :.|.|:...|:...:.:| ..:.|||
  Rat    64 SPINIQWTDSV---------YDPKLAPLRVSYDAASCRYLWNTGYFFQVEFDDSCEE-SGISGGP 118

  Fly   109 LAEKTPLGYQFEQFHFHWGENDTIGSEDLINNRAYPAELHVVLRN-LEYPDFASALDKDHGIAVM 172
            |...    |:.:|||||||..|..|||.:::..|||||||:|..| ::|.::..|...::|:||:
  Rat   119 LGNH----YRLKQFHFHWGATDEWGSEHMVDGHAYPAELHLVHWNSMKYENYKKATTGENGLAVI 179

  Fly   173 AFFFQVGDKSTGGYEGFTNLLSQIDRKGKSVNMTNPLPLGEY----ISKSVESYFSYTGSLTTPP 233
            ..|.::|.... ..:...::|.::..|...|.|      |.:    :..:...|::|.|||||||
  Rat   180 GVFLKLGAHHE-ALQRLVDILPEVRHKDTQVTM------GPFDPSCLLPACRDYWTYPGSLTTPP 237

  Fly   234 CSEEVTWIDFTTPIDITEKQLNAFRLLT-----ANDDHLKNNFRPIQPLNDRTLYKNYIEIP 290
            .:|.||||....||:::..||:.||.|.     .:::.:.|||||:|||..|.:..:: ::|
  Rat   238 LAESVTWIVHKMPIEVSPSQLSTFRTLLFSGRGEDEEVMVNNFRPLQPLRGRNVRSSF-QVP 298

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.