back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CAH2 and cahz

DIOPT Version :9

Sequence 1:	NP_648555.1	Gene:	CAH2 / 39390	FlyBaseID:	FBgn0027843	Length:	335	Species:	Drosophila melanogaster
Sequence 2:	NP_571185.1	Gene:	cahz / 30331	ZFINID:	ZDB-GENE-980526-39	Length:	260	Species:	Danio rerio

Alignment Length:	271	Identity:	93/271 - (34%)
Similarity:	140/271 - (51%)	Gaps:	20/271 - (7%)

- Green bases have known domain annotations that are detailed below.

  Fly    24 LAQDFGYEGRHGPEHWSEDYARCSGKHQSPINIDQVSAVEKKFPKLEFFNFKVVPDNLQ-MTNNG 87
            :|..:||....|||.|:|.:...:|..||||:|  |....:..|.|:....|..|...: :.|||
Zfish     1 MAHAWGYGPADGPESWAESFPIANGPRQSPIDI--VPTQAQHDPSLKHLKLKYDPATTKSILNNG 63

  Fly    88 HTVLVKMSYNEDEIPSVRGGPLAEKTPLGYQFEQFHFHWGENDTIGSEDLINNRAYPAELHVVLR 152
            |:..|.. .::|...::.|||:   |.: |:..|||||||.:|..|||..|....:|.|||:|..
Zfish    64 HSFQVDF-VDDDNSSTLAGGPI---TGI-YRLRQFHFHWGSSDDKGSEHTIAGTKFPCELHLVHW 123

  Fly   153 NLEYPDFASALDKDHGIAVMAFFFQVGDKSTGGYEGFTNLLSQIDRKGKSVNMTN--PLPLGEYI 215
            |.:||:|..|..|..|:||:..|.::| .:....:...:.|..|..||:.....|  |..|   :
Zfish   124 NTKYPNFGEAASKPDGLAVVGVFLKIG-AANPRLQKVLDALDDIKSKGRQTTFANFDPKTL---L 184

  Fly   216 SKSVESYFSYTGSLTTPPCSEEVTWIDFTTPIDITEKQLNAFRLLTANDDH-----LKNNFRPIQ 275
            ..|:: |::|.|||||||..|.||||....||.::..|:..||.|..:.:.     :.:|:||.|
Zfish   185 PASLD-YWTYEGSLTTPPLLESVTWIVLKEPISVSPAQMAKFRSLLFSSEGETPCCMVDNYRPPQ 248

  Fly   276 PLNDRTLYKNY 286
            ||..|.:..::
Zfish   249 PLKGRKVRASF 259

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.