DRSC/TRiP Functional Genomics Resources

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Protein Alignment CAH2 and Ca5b

DIOPT Version :9

Sequence 1:NP_648555.1 Gene:CAH2 / 39390 FlyBaseID:FBgn0027843 Length:335 Species:Drosophila melanogaster
Sequence 2:NP_001005551.1 Gene:Ca5b / 302669 RGDID:1549783 Length:317 Species:Rattus norvegicus


Alignment Length:281 Identity:92/281 - (32%)
Similarity:142/281 - (50%) Gaps:19/281 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 IAPILICASLVLAQDFGYEGRHGPEHWSEDYARCSGKHQSPINIDQVSAVEKKFPKLEFFNFKVV 77
            :.|:..|:  :....:....|..|..|.......:|..||||||....:|..  |.|:.......
  Rat    28 LVPLRSCS--LYTCTYRTRNRALPPLWENLDLVPAGDRQSPINIRWRDSVYD--PGLKPLTISYD 88

  Fly    78 PDN-LQMTNNGHTVLVKMSYNEDEIPSVRGGPLAEKTPLGYQFEQFHFHWGENDTIGSEDLINNR 141
            |.. |.:.|||::.||:.....|: ..:.||||..    .|:.:|||||||..|..|||..::::
  Rat    89 PATCLHIWNNGYSFLVEFEDTTDK-SVIEGGPLEH----NYRLKQFHFHWGAIDAWGSEHTVDSK 148

  Fly   142 AYPAELHVVLRN-LEYPDFASALDKDHGIAVMAFFFQVGDKSTGGYEGFTNLLSQIDRKGKSVNM 205
            .||||||:|..| :::..|..|..:::|:||:..|.::| |.....:...:.|..|..|...|..
  Rat   149 CYPAELHLVHWNAVKFESFEDAALEENGLAVIGVFLKLG-KHHKELQKLVDTLPSIKHKDTLVKF 212

  Fly   206 TNPLPLGEYISKSVESYFSYTGSLTTPPCSEEVTWIDFTTPIDITEKQLNAFR--LLTANDDHLK 268
            .:..|  ..:..:...|::|:|||||||.||.||||....|:::...||..||  |.|:..:..|
  Rat   213 GSFDP--SCLMPTCPDYWTYSGSLTTPPLSESVTWIIKKQPVEVDHDQLEQFRTLLFTSEGEKEK 275

  Fly   269 ---NNFRPIQPLNDRTLYKNY 286
               :||||:|||.:||:..::
  Rat   276 RMVDNFRPLQPLMNRTVRSSF 296

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CAH2NP_648555.1 Carb_anhydrase 28..281 CDD:215000 88/259 (34%)
Ca5bNP_001005551.1 alpha_CA 61..296 CDD:412109 87/244 (36%)