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Protein Alignment CAH2 and Ca4

DIOPT Version :9

Sequence 1:	NP_648555.1	Gene:	CAH2 / 39390	FlyBaseID:	FBgn0027843	Length:	335	Species:	Drosophila melanogaster
Sequence 2:	NP_062047.1	Gene:	Ca4 / 29242	RGDID:	2242	Length:	309	Species:	Rattus norvegicus

Alignment Length:	280	Identity:	95/280 - (33%)
Similarity:	136/280 - (48%)	Gaps:	39/280 - (13%)

- Green bases have known domain annotations that are detailed below.

  Fly    35 GPEHWSEDYARCSGKHQSPINIDQVSAVEKKFPKLEFFNFKVVPD---NLQMTNNGHTVLVKMSY 96
            |||.|:.|   |....||||||  |::..|..|.|..|.| |..|   ..::.||.|:  |:||.
  Rat    37 GPEQWTGD---CKKNQQSPINI--VTSKTKLNPSLTPFTF-VGYDQKKKWEVKNNQHS--VEMSL 93

  Fly    97 NEDEIPSVRGGPLAEKTPLGYQFEQFHFHWGENDTIGSEDLINNRAYPAELHVVLRNLEYPDFAS 161
            .||..  :.||.|    |..|:..|.|.||.|....|||..|:.:.:..|:|||.:.:...|...
  Rat    94 GEDIY--IFGGDL----PTQYKAIQLHLHWSEESNKGSEHSIDGKHFAMEMHVVHKKMTTGDKVQ 152

  Fly   162 ALDKDHGIAVMAFFFQVGDKSTGGYEGFTNLLSQIDR--KGKSVN---MTNPLPLGEYISKSVES 221
            ..|....|||:||..:||::...|::.....||::.:  ...:|:   :.:.||    ..|.:.:
  Rat   153 DSDSKDKIAVLAFMVEVGNEVNEGFQPLVEALSRLSKPFTNSTVSESCLQDMLP----EKKKLSA 213

  Fly   222 YFSYTGSLTTPPCSEEVTWIDFTTPIDITEKQLNAFRLLTANDD----HLKNNFRPIQPLNDRTL 282
            ||.|.||||||.|.|.|.|..|..||.|.:.|...|......|.    ::|:|.||:|||.:|.:
  Rat   214 YFRYQGSLTTPGCDETVIWTVFEEPIKIHKDQFLEFSKKLYYDQEQKLNMKDNVRPLQPLGNRQV 278

  Fly   283 YKNYIEIPIHNMG---SIPL 299
            :::      |..|   |:||
  Rat   279 FRS------HASGRLLSLPL 292

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.