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Protein Alignment CAH2 and Car5a

DIOPT Version :9

Sequence 1:	NP_648555.1	Gene:	CAH2 / 39390	FlyBaseID:	FBgn0027843	Length:	335	Species:	Drosophila melanogaster
Sequence 2:	NP_031634.2	Gene:	Car5a / 12352	MGIID:	101946	Length:	299	Species:	Mus musculus

Alignment Length:	323	Identity:	94/323 - (29%)
Similarity:	151/323 - (46%)	Gaps:	71/323 - (21%)

- Green bases have known domain annotations that are detailed below.

  Fly     1 MRRCRNTPFAIVIAPILICASLVLAQDFGYEGRHGPEHW------SEDYARCS------------ 47
            :||....|.||:....|:||:             ||:.|      :|:::.|:
Mouse     2 LRRDPRKPLAILRHVGLLCAT-------------GPQRWRFQHSCAEEHSNCARHPLWTGPVSSA 53

  Fly    48 -GKHQSPINIDQVSAVEKKFPKLEFFNFKVVPDNLQ--------MTNNGHTVLVKMSYNEDEIPS 103
             |..||||||....:|         ::.::.|..:.        :.|.|:...|:.. :..|...
Mouse    54 EGTRQSPINIQWKDSV---------YDPQLAPLRVSYDAASCRYLWNTGYFFQVEFD-DSCEDSG 108

  Fly   104 VRGGPLAEKTPLGYQFEQFHFHWGENDTIGSEDLINNRAYPAELHVVLRN-LEYPDFASALDKDH 167
            :.||||...    |:.:|||||||..|..|||..::...||||||:|..| .:|.::..|...::
Mouse   109 ISGGPLGNH----YRLKQFHFHWGATDEWGSEHAVDGHTYPAELHLVHWNSTKYENYKKASVGEN 169

  Fly   168 GIAVMAFFFQVGDKSTGGYEGFTNLLSQIDRKGKSVNMTNPLPLGEY----ISKSVESYFSYTGS 228
            |:||:..|.::|.... ..:...::|.::..|...|.|      |.:    :..:...|::|.||
Mouse   170 GLAVIGVFLKLGAHHQ-ALQKLVDVLPEVRHKDTQVAM------GPFDPSCLLPACRDYWTYPGS 227

  Fly   229 LTTPPCSEEVTWIDFTTPIDITEKQLNAFRLLT-----ANDDHLKNNFRPIQPLNDRTLYKNY 286
            |||||.:|.||||...||::::..||:.||.|.     ..:|.:.||:||:|||.||.|..::
Mouse   228 LTTPPLAESVTWIVQKTPVEVSPSQLSTFRTLLFSGRGEEEDVMVNNYRPLQPLRDRKLRSSF 290

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.