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Protein Alignment CAH2 and Car4

DIOPT Version :9

Sequence 1:	NP_648555.1	Gene:	CAH2 / 39390	FlyBaseID:	FBgn0027843	Length:	335	Species:	Drosophila melanogaster
Sequence 2:	NP_031633.1	Gene:	Car4 / 12351	MGIID:	1096574	Length:	305	Species:	Mus musculus

Alignment Length:	311	Identity:	103/311 - (33%)
Similarity:	142/311 - (45%)	Gaps:	53/311 - (17%)

- Green bases have known domain annotations that are detailed below.

  Fly    17 LICASLVLA------QDFG--YEGRH--------GPEHWSEDYARCSGKHQSPINIDQVSAVEKK 65
            |:.|.|.||      :|.|  ||.:.        |||.|.   ..|....||||||  |:|..|.
Mouse     3 LLLALLALAYVAPSTEDSGWCYEIQTKDPRSSCLGPEKWP---GACKENQQSPINI--VTARTKV 62

  Fly    66 FPKLEFFNFKVVPDNLQ---MTNNGHTVLVKMSYNEDEIPSVRGGPLAEKTPLGYQFEQFHFHWG 127
            .|:|..| ..|..|..|   :.||.|||.:.:...    ..:.||.|    |..|:..|.|.||.
Mouse    63 NPRLTPF-ILVGYDQKQQWPIKNNQHTVEMTLGGG----ACIIGGDL----PARYEAVQLHLHWS 118

  Fly   128 ENDTIGSEDLINNRAYPAELHVVLRNLEYPDFASALDKDHGIAVMAFFFQVGDKSTGGYEGFTNL 192
            ..:..|||..|:.|.:..|:|:|.:.|.    :|..|.....||:||..:||||...|::.....
Mouse   119 NGNDNGSEHSIDGRHFAMEMHIVHKKLT----SSKEDSKDKFAVLAFMIEVGDKVNKGFQPLVEA 179

  Fly   193 LSQIDRKGKSVNMTNPLPLGEYISKSVE--SYFSYTGSLTTPPCSEEVTWIDFTTPIDITEKQLN 255
            |..|. |..|.:......|.:.:..|.:  :||.|.||||||.|.|.|.|..:..||.|.:.|..
Mouse   180 LPSIS-KPHSTSTVRESSLQDMLPPSTKMYTYFRYNGSLTTPNCDETVIWTVYKQPIKIHKNQFL 243

  Fly   256 AF-RLLTANDD---HLKNNFRPIQPLNDRTLYKNYIEIPIHNMG---SIPL 299
            .| :.|..::|   ::|:|.||:|||..|.::|:      |..|   |:||
Mouse   244 EFSKNLYYDEDQKLNMKDNVRPLQPLGKRQVFKS------HAPGQLLSLPL 288

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.