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Protein Alignment CAH2 and Car3

DIOPT Version :9

Sequence 1:	NP_648555.1	Gene:	CAH2 / 39390	FlyBaseID:	FBgn0027843	Length:	335	Species:	Drosophila melanogaster
Sequence 2:	NP_031632.2	Gene:	Car3 / 12350	MGIID:	88270	Length:	260	Species:	Mus musculus

Alignment Length:	269	Identity:	87/269 - (32%)
Similarity:	138/269 - (51%)	Gaps:	16/269 - (5%)

- Green bases have known domain annotations that are detailed below.

  Fly    24 LAQDFGYEGRHGPEHWSEDYARCSGKHQSPINIDQVSAVEKKFPKLEFFNFKVVPDNLQ-MTNNG 87
            :|:::||...:||:||.|.|....|.:||||.:.....  |..|.|:.::....|.:.: :.|||
Mouse     1 MAKEWGYASHNGPDHWHELYPIAKGDNQSPIELHTKDI--KHDPSLQPWSASYDPGSAKTILNNG 63

  Fly    88 HTVLVKMSYNEDEIPSVRGGPLAEKTPLGYQFEQFHFHWGENDTIGSEDLINNRAYPAELHVVLR 152
            .|..|......|. ..:|||||:..    |:..|||.|||.:|..|||..::...|.||||:|..
Mouse    64 KTCRVVFDDTYDR-SMLRGGPLSGP----YRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHW 123

  Fly   153 NLEYPDFASALDKDHGIAVMAFFFQVGDKSTGGYEGFTNLLSQIDRKGKSVNMTNPLPLGEYISK 217
            |.:|..|..||.:..||||:..|.::| :..|.::...:.|.:|..|||....|:..|  ..:..
Mouse   124 NPKYNTFGEALKQPDGIAVVGIFLKIG-REKGEFQILLDALDKIKTKGKEAPFTHFDP--SCLFP 185

  Fly   218 SVESYFSYTGSLTTPPCSEEVTWIDFTTPIDITEKQLNAFRLLTANDDH-----LKNNFRPIQPL 277
            :...|::|.||.|||||.|.:.|:....|:.::..|:...|.|.::.::     |..|:||.||:
Mouse   186 ACRDYWTYHGSFTTPPCEECIVWLLLKEPMTVSSDQMAKLRSLFSSAENEPPVPLVGNWRPPQPV 250

  Fly   278 NDRTLYKNY 286
            ..|.:..::
Mouse   251 KGRVVRASF 259

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.