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Protein Alignment CAH2 and Car2

DIOPT Version :9

Sequence 1:	NP_648555.1	Gene:	CAH2 / 39390	FlyBaseID:	FBgn0027843	Length:	335	Species:	Drosophila melanogaster
Sequence 2:	NP_001344263.1	Gene:	Car2 / 12349	MGIID:	88269	Length:	260	Species:	Mus musculus

Alignment Length:	270	Identity:	92/270 - (34%)
Similarity:	146/270 - (54%)	Gaps:	18/270 - (6%)

- Green bases have known domain annotations that are detailed below.

  Fly    24 LAQDFGYEGRHGPEHWSEDYARCSGKHQSPINIDQVSAVEKKFPKLE--FFNFKVVPDNLQMTNN 86
            ::..:||...:|||:|.:|:...:|..|||::||  :|..:..|.|:  ..::...... .:.||
Mouse     1 MSHHWGYSKHNGPENWHKDFPIANGDRQSPVDID--TATAQHDPALQPLLISYDKAASK-SIVNN 62

  Fly    87 GHTVLVKMSYNEDEIPSVRGGPLAEKTPLGYQFEQFHFHWGENDTIGSEDLINNRAYPAELHVVL 151
            ||:..|:...::|. ..::||||::    .|:..|||||||.:|..|||..:|.:.|.||||:|.
Mouse    63 GHSFNVEFDDSQDN-AVLKGGPLSD----SYRLIQFHFHWGSSDGQGSEHTVNKKKYAAELHLVH 122

  Fly   152 RNLEYPDFASALDKDHGIAVMAFFFQVGDKSTGGYEGFTNLLSQIDRKGKSVNMTNPLPLGEYIS 216
            .|.:|.||..|:.:..|:||:..|.::|..|. |.:.....|..|..|||.....|..|..  :.
Mouse   123 WNTKYGDFGKAVQQPDGLAVLGIFLKIGPASQ-GLQKVLEALHSIKTKGKRAAFANFDPCS--LL 184

  Fly   217 KSVESYFSYTGSLTTPPCSEEVTWIDFTTPIDITEKQLNAFRLLTAN-----DDHLKNNFRPIQP 276
            .....|::|.|||||||..|.||||....||.::.:|::.||.|..|     ::.:.:|:||.||
Mouse   185 PGNLDYWTYPGSLTTPPLLECVTWIVLREPITVSSEQMSHFRTLNFNEEGDAEEAMVDNWRPAQP 249

  Fly   277 LNDRTLYKNY 286
            |.:|.:..::
Mouse   250 LKNRKIKASF 259

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.