DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh7 and npr-18

DIOPT Version :9

Sequence 1:NP_524035.2 Gene:Rh7 / 39389 FlyBaseID:FBgn0036260 Length:483 Species:Drosophila melanogaster
Sequence 2:NP_001257085.1 Gene:npr-18 / 183408 WormBaseID:WBGene00008065 Length:476 Species:Caenorhabditis elegans


Alignment Length:428 Identity:98/428 - (22%)
Similarity:160/428 - (37%) Gaps:90/428 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 FWLQFEPPKS----STFLIMAALYCLISVVGCVGNAFVIFMFANRK-----SLRTPANILVMNLA 159
            |.|.:..|.|    |:.:::|..|.|:.:.|..|||.::.:..:.|     |........:..|:
 Worm    44 FTLVYALPLSNHDNSSLMLIAGFYALLFMFGTCGNAAILAVVHHVKGQDPRSRHNTTLTYICILS 108

  Fly   160 ICDFLMLIKCPIAIYNNIKEGPALGDIACRLYGFVGGLSGTCAIGTLTAIALDRYNVVVHPLQPL 224
            |.|||.::..|:.|.:.|.........||:|:..:..:....:...|.|.::|||..|.||||. 
 Worm   109 IVDFLSMLPIPMTIIDQILGFWMFDTFACKLFRLLEHIGKIFSTFILVAFSIDRYCAVCHPLQV- 172

  Fly   225 RRCSRLRSYLIIL--------------LIWCYSFLFAVMPALDIGLSVYVPEGFLTTCSFDYLNK 275
             |....|:..:.|              |::.:|....:...:|:...| :....|..| .|.|.:
 Worm   173 -RVRNQRTVFVFLGIMFFVTCVMLSPILLYAHSKELVMHEKVDLDQEV-ITRMHLYKC-VDDLGR 234

  Fly   276 EMPARIFMALFFVAAYCIPLTSIVYSYFYILKVVFTASRIQS----NKDKAKTEQKL-------A 329
            |:.. :|....||.||.:||..::|.|:.:|..:|..:.:..    .:.....|:||       |
 Worm   235 ELFV-VFTLYSFVLAYLMPLLFMIYFYYEMLIRLFKQANVIKQTLVGRRSGGEEKKLTIPVGHIA 298

  Fly   330 FIVAAIIGLWFLAWSPYAIVAMMGVFGLERHITPLGSMIPALFCKTAACVDPYLYAATH------ 388
            ....||....|:.|:||             .|:.|.|:...|:..|.:...|..||..:      
 Worm   299 IYTLAICSFHFICWTPY-------------WISILYSLYEELYQDTKSTASPPTYAFIYFMYGVH 350

  Fly   389 --PRFRVEVRMLFYGRGVLRRV-------STTRSSYMTRSRSSFTHRLRTSTTGE---------- 434
              |........:.|  |:|.|.       ..||:....|..|   |.|.|:|..|          
 Worm   351 ALPYINSASNFILY--GLLNRQLHNAPERKYTRNGVGGRQMS---HALTTNTRPEYSELIAIPSS 410

  Fly   435 GGMGDHRMENYLMNNNLMMVPEETEENEEIVVVAEINN 472
            ....|.|:...:.|||        ...|.:.:...|:|
 Worm   411 SCRPDSRVSAMIHNNN--------NNTESLPLAQNISN 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh7NP_524035.2 7tm_4 125..>247 CDD:304433 33/140 (24%)
7tm_1 133..384 CDD:278431 65/280 (23%)
npr-18NP_001257085.1 7tm_classA_rhodopsin-like 63..368 CDD:381740 74/324 (23%)
TM helix 1 63..87 CDD:381740 7/23 (30%)
TM helix 2 101..122 CDD:381740 6/20 (30%)
TM helix 3 138..160 CDD:381740 3/21 (14%)
TM helix 4 182..198 CDD:381740 1/15 (7%)
TM helix 5 238..261 CDD:381740 8/23 (35%)
TM helix 6 291..320 CDD:381740 8/41 (20%)
TM helix 7 343..368 CDD:381740 3/26 (12%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24229
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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