DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh7 and F36D4.4

DIOPT Version :9

Sequence 1:NP_524035.2 Gene:Rh7 / 39389 FlyBaseID:FBgn0036260 Length:483 Species:Drosophila melanogaster
Sequence 2:NP_001343846.1 Gene:F36D4.4 / 179322 WormBaseID:WBGene00018089 Length:523 Species:Caenorhabditis elegans


Alignment Length:472 Identity:91/472 - (19%)
Similarity:165/472 - (34%) Gaps:146/472 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 SATESSAVNVGKDHDKH---------VNDSVSTGLSNYSNYPSYIHYRDKYDLSYIAKVNPFWLQ 107
            :.|:...|::.::|:..         :|.::...:.|||:|             |:.|..||   
 Worm    13 AVTDPLIVSMLQEHEPSQLVAHGEDVLNSTMEENIGNYSDY-------------YLIKRVPF--- 61

  Fly   108 FEPPKSSTFLIMAALYC-LISVVGCVGNAFVIFMFA--NRKSLRTPANILVMNLAICDF-----L 164
            :|.....|....|...| .:..:..:.|.|||....  .|:.|.....::|::.|:.|.     |
 Worm    62 YENYSQETMATTAVFLCGHLGALSVILNLFVIIALLRHRRRVLSNVFYVIVLHCAVLDVARGVCL 126

  Fly   165 MLIKCPI---AIYN-NIKEGPALGDIACRLYGF--------VGGLSGTCAIGTLTAIALDRYNVV 217
            :|...|.   :.|| |:       ||..|::.|        :..:.....|..|.....:.|.|:
 Worm   127 ILYGLPYFANSFYNINL-------DIHTRIHLFQLSRFALVILRVCNLLTIFNLLVFTTNEYIVI 184

  Fly   218 VHPLQPLRRCSRLRSYLIILLI-WCYSFLFAVMPALDIGLSVYVPEGFLTTCS---FDYLNKEMP 278
            .:||. .||..|.:..||||.| |..|.:.|:              |.|.:.|   .::|..|..
 Worm   185 RYPLH-YRRYFRRKFVLIILAICWTMSIMMAL--------------GILYSSSKSQTEWLPPEER 234

  Fly   279 ----ARIFMALFFVAAYC-IPLTSIVYSYFYILKVV----------------------------- 309
                |.|.|.|  :::.| :.|.::|..|..||:.:                             
 Worm   235 GIDFATITMVL--ISSLCFVTLGTVVICYISILRTIRKFKDEGCLNNDESHRIHNRSLHRPINGQ 297

  Fly   310 ----FTASRIQSNK---DKAKTEQKLAFIVAAIIGLWFLAWSPYAIVAMMGVFGLERHI------ 361
                ...|.::.:|   .:|.:..|..:::.:::.:..|...||:.:.|:....:...:      
 Worm   298 GSNCSNGSSLRGSKWRSVQAMSRHKYIYVIGSVLIVDLLFLCPYSGIQMVSFLHINNFLQITHGS 362

  Fly   362 TPLGSMIPALFCKTAACVDPYLY---------AATHPRFRVEVRMLFYGRGVLRRVSTTRS-SYM 416
            |.:...:..|....:.| .|..|         |..:||               |..:.|:| |.|
 Worm   363 TLIRWWLQVLIGVHSVC-QPLCYFRMTEFRRLACCNPR---------------RPWNRTKSFSQM 411

  Fly   417 TRSRSSFTHRLRTSTTG 433
            .:|.::....:|....|
 Worm   412 NKSFANTRSNVREDENG 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh7NP_524035.2 7tm_4 125..>247 CDD:304433 35/141 (25%)
7tm_1 133..384 CDD:278431 63/320 (20%)
F36D4.4NP_001343846.1 7tm_classA_rhodopsin-like 81..387 CDD:381740 64/330 (19%)
TM helix 2 109..131 CDD:381740 5/21 (24%)
TM helix 3 156..178 CDD:381740 2/21 (10%)
TM helix 4 201..215 CDD:381740 6/13 (46%)
TM helix 5 239..262 CDD:381740 7/24 (29%)
TM helix 6 321..346 CDD:381740 4/24 (17%)
TM helix 7 359..387 CDD:381740 5/28 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24229
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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