DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh7 and opn4b

DIOPT Version :9

Sequence 1:NP_524035.2 Gene:Rh7 / 39389 FlyBaseID:FBgn0036260 Length:483 Species:Drosophila melanogaster
Sequence 2:NP_001245153.1 Gene:opn4b / 100884131 ZFINID:ZDB-GENE-080415-3 Length:565 Species:Danio rerio


Alignment Length:442 Identity:140/442 - (31%)
Similarity:215/442 - (48%) Gaps:58/442 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 NSSHSHSTGSTTSTAGSSATESSAVNVGKDHDKHVNDSVSTGLSNYSNYPSYIHYRDKYDLSYIA 99
            |:|.|.|.|..|..|.|:|               |:||::..  |||...::.........:.:|
Zfish     2 NASRSLSMGIPTQVANSTA---------------VSDSLAPW--NYSAVSAHKLMELPARATTVA 49

  Fly   100 KV----NPFWLQFEPPKSSTFLIMAALYCLISVVGCVGNAFVIFMFANRKSLRTPANILVMNLAI 160
            .|    :|| ...:.|..:.:.| .::...:.:.|.|||..|::.|...:|||||||:.::|||:
Zfish    50 MVQDVRHPF-PTVDVPDHAHYTI-GSVILAVGITGMVGNLLVMYAFCKSRSLRTPANMFIINLAV 112

  Fly   161 CDFLMLI-KCPIAIYNNIKEGPALGDIACRLYGFVGGLSGTCAIGTLTAIALDRYNVVVHPLQPL 224
            .||||.: :.||....::.:....|:..|.||.|.|.|.|.|::.||..||:|||.|:..||..:
Zfish   113 TDFLMCVTQTPIFFTTSLHKRWIFGEKGCELYAFCGALFGICSMITLMIIAVDRYFVITRPLASI 177

  Fly   225 RRCSRLRSYLIILLIWCYSFLFAVMPALDIGLSVYVPEGFLTTCSFDYLNKEMPARIFMALFFVA 289
            ...||.|:.||:...|.||..:::.|.  .|.|.|||||.||:||:||:......|.:..|.|..
Zfish   178 GVMSRKRALLILSAAWAYSMGWSLPPF--FGWSAYVPEGLLTSCSWDYMTFSPSVRAYTMLLFTF 240

  Fly   290 AYCIPLTSIVYSYFYILKVVFTASRIQSN-------KD------KAKTEQKLAFIVAAIIGLWFL 341
            .:.|||..|:|.||:|.|.:...:|....       :|      :.|.|.|:|.|...:|.|:.:
Zfish   241 VFFIPLFVIIYCYFFIFKAIRETNRAVGKINGEGGPRDSIKKIHRMKNEWKMAKIALIVILLYVI 305

  Fly   342 AWSPYAIVAMMGVFGLERHITPLGSMIPALFCKTAACVDPYLYAATHPRFRVEVRMLFYGRGVL- 405
            :||||:.||:....|....:||..:.:||:..|.:|..:|.:||.|||::|..:.......||| 
Zfish   306 SWSPYSCVALTAFAGYADMLTPYMNSVPAVIAKASAIHNPIIYAITHPKYRSAIAKYIPCLGVLL 370

  Fly   406 ---RRVSTTRSSYMTRSRSSFTH---------------RLRTSTTGEGGMGD 439
               ||...:.||:::..||:.|.               ||.:.:..|.|..|
Zfish   371 CVPRRDRFSSSSFISTRRSTLTSQSSETSSNLHRAGKARLSSVSDSESGWTD 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh7NP_524035.2 7tm_4 125..>247 CDD:304433 49/122 (40%)
7tm_1 133..384 CDD:278431 96/264 (36%)
opn4bNP_001245153.1 7tm_4 78..>305 CDD:304433 84/228 (37%)
7tm_1 85..348 CDD:278431 96/264 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D389088at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.920

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