DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh7 and ltb4r2b

DIOPT Version :10

Sequence 1:NP_524035.2 Gene:Rh7 / 39389 FlyBaseID:FBgn0036260 Length:483 Species:Drosophila melanogaster
Sequence 2:NP_001295899.2 Gene:ltb4r2b / 100537296 ZFINID:ZDB-GENE-070912-658 Length:339 Species:Danio rerio


Alignment Length:343 Identity:83/343 - (24%)
Similarity:137/343 - (39%) Gaps:71/343 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   113 SSTFLIMAALYCLISV-VGCVGNAFVIFMFANRKSLRTPANILVMNLAICDFLMLIKCPIAIYNN 176
            :||.....||...|:: :|..||.|:|:....|...|:...:|::|||..|..::......|...
Zfish    26 NSTSATFGALILSIAILLGIPGNLFIIWSILARARKRSVTTLLILNLAFADGCLMFLTIFFIIYL 90

  Fly   177 IKEGPALGDIACRLYGFVGGLSGTCAIGTLTAIALDRYNVVVHPLQPLRRCSRLRSYLIIL-LIW 240
            .|:....|::.|:|..::...:...:|..:|.::|.|...|:.| ..|..|:|..:.|::| .:|
Zfish    91 AKQNWIFGEVLCKLLFYLCNTNMYASIMIITLMSLHRLVAVMWP-SYLSVCTRRLTVLLVLGGLW 154

  Fly   241 CYSFLFAVMPAL------DIGLSVYVPEGFLTTCSFDYLNKEMPARIFMALFFVAAYCIPLTSIV 299
            ...||.| ||.|      .||....|.|        .:.|:...|.....|..:..:.:|...||
Zfish   155 VAVFLLA-MPVLMFRAEKTIGNKRIVCE--------THHNRTEQAVFQYTLETMVGFLVPYVIIV 210

  Fly   300 YSYFYILKVVFTASRIQSNKDK--AKTEQKLAFIVAAIIGLWFLAWSPYAIVAMMGVFGLERHIT 362
            .||..||:      |::..|.|  .::|.    ::.|||..:.:.|.||.|:.::.|...   :|
Zfish   211 SSYVCILR------RLRQTKFKRMIRSEN----LIQAIIVTFCIFWLPYHILNVVQVMAA---LT 262

  Fly   363 PLG--------------SMIPALFCKTAACVDPYLYAATHPRFRVEVRMLFYGRGVLRRVSTTRS 413
            |.|              ..:.:.....::|.:|.|||             |.||           
Zfish   263 PEGMPLKTQLKNIWESSRAVTSTLAFISSCANPVLYA-------------FAGR----------- 303

  Fly   414 SYMTRSRSSFTHRLRTST 431
            ||:.....:|..||...|
Zfish   304 SYIKADGLAFMARLFEGT 321

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh7NP_524035.2 7tm_GPCRs 118..395 CDD:475119 72/300 (24%)
TM helix 1 119..143 CDD:320207 8/24 (33%)
TM helix 2 152..173 CDD:320207 5/20 (25%)
TM helix 3 189..211 CDD:320207 3/21 (14%)
TM helix 4 234..250 CDD:320207 6/16 (38%)
TM helix 5 280..303 CDD:320207 5/22 (23%)
TM helix 6 329..351 CDD:320207 7/21 (33%)
TM helix 7 363..388 CDD:320207 7/38 (18%)
ltb4r2bNP_001295899.2 7tm_GPCRs 33..310 CDD:475119 77/323 (24%)
TM helix 1 33..57 CDD:410628 8/23 (35%)
TM helix 2 66..87 CDD:410628 5/20 (25%)
TM helix 3 103..125 CDD:410628 3/21 (14%)
TM helix 4 148..164 CDD:410628 6/16 (38%)
TM helix 5 191..214 CDD:410628 5/22 (23%)
TM helix 6 232..254 CDD:410628 8/25 (32%)
TM helix 7 277..302 CDD:410628 6/37 (16%)

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