DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rh7 and XB5957215

DIOPT Version :9

Sequence 1:NP_524035.2 Gene:Rh7 / 39389 FlyBaseID:FBgn0036260 Length:483 Species:Drosophila melanogaster
Sequence 2:XP_031759018.1 Gene:XB5957215 / 100485437 XenbaseID:XB-GENE-5957216 Length:582 Species:Xenopus tropicalis


Alignment Length:360 Identity:109/360 - (30%)
Similarity:179/360 - (49%) Gaps:33/360 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 QFEPPKSSTFLIMAALYCLISVVGCVGNAFVIFMFANRKSLRTPANILVMNLAICDFLM-LIKCP 170
            |.:.|....:.| .:...:|..||.:||..|::.|.:.|.|||..|..:|||||.|||| ..:.|
 Frog    19 QLDAPAQVLYTI-GSFILIIGFVGIIGNLLVLYAFYSNKKLRTAPNYFIMNLAISDFLMSATQAP 82

  Fly   171 IAIYNNIKEGPALGDIACRLYGFVGGLSGTCAIGTLTAIALDRYNVVVHPLQPLRRCSRLRSYLI 235
            :...:::.....||:|.|.:|.|.|.|.|..::.||.||:::||.|:..|||.::..|:.|:..:
 Frog    83 VCFLSSLHREWILGEIGCNVYAFCGALFGITSMMTLLAISVNRYIVITKPLQSIQWSSKKRTSQV 147

  Fly   236 ILLIWCYSFLFAVMPALDIGLSVYVPEGFLTTCSFDYLNKEMPARIFMALFFVAAYCIPLTSIVY 300
            |:|:|.|||::::.|.|  |.|.|||||...:|::||:......:.:..:.....:.|||..|.:
 Frog   148 IVLVWMYSFMWSLAPLL--GWSSYVPEGLRISCTWDYVTSTTSNKSYTMMLCCCVFFIPLIIISH 210

  Fly   301 SYFYILKVVFTASRIQSNKDK-------------AKTEQKLAFIVAAIIGLWFLAWSPYAIVAMM 352
            .||::...:.:..|   |..|             .|.|.|:|.|...||.::.|:|||||.|.::
 Frog   211 CYFFMFLAIRSTGR---NVQKLGSYGRQSFLTPTMKNEWKMAKIAFVIIIVYVLSWSPYACVTLI 272

  Fly   353 GVFGLERHITPLGSMIPALFCKTAACVDPYLYAATHPRFRVEV-------RMLFYG------RGV 404
            ...|..:.:||....:||:..|.:|..:|.:|...||::|..:       |.|...      ...
 Frog   273 AWAGHGKSLTPYSKTVPAVIAKASAIYNPIIYGIIHPKYRETIHKTVPCLRFLIKEPKKDCFESS 337

  Fly   405 LRRVSTTRSSYMTRSRSSFTHRLRTSTTGEGGMGD 439
            :|....:|.|.:.|.::|....:.|:.|....:.|
 Frog   338 VRGSIYSRQSLVARKKNSCISTVSTAETVSSNVWD 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh7NP_524035.2 7tm_4 125..>247 CDD:304433 49/122 (40%)
7tm_1 133..384 CDD:278431 89/264 (34%)
XB5957215XP_031759018.1 7tmA_Melanopsin 28..315 CDD:320458 97/292 (33%)
TM helix 1 30..54 CDD:320458 8/24 (33%)
TM helix 2 63..85 CDD:320458 11/21 (52%)
TM helix 3 101..123 CDD:320458 9/21 (43%)
TM helix 4 146..162 CDD:320458 6/15 (40%)
TM helix 5 190..213 CDD:320458 4/22 (18%)
TM helix 6 249..271 CDD:320458 11/21 (52%)
TM helix 7 283..308 CDD:320458 7/24 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D389088at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.