DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nrx-IV and Cubn

DIOPT Version :10

Sequence 1:NP_524034.2 Gene:Nrx-IV / 39387 FlyBaseID:FBgn0013997 Length:1284 Species:Drosophila melanogaster
Sequence 2:NP_727348.2 Gene:Cubn / 326235 FlyBaseID:FBgn0052702 Length:3750 Species:Drosophila melanogaster


Alignment Length:799 Identity:153/799 - (19%)
Similarity:231/799 - (28%) Gaps:328/799 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   460 SFVISIEKNRLILNIDQRPMTTTKSMQVATGAQYYIAGGKDKNGFVGCMRLIS--VDGN------ 516
            ||.:| ..:||.:|.:...|    .:.:||......:|||| :.||....|..  .|.|      
  Fly    53 SFRLS-GNSRLTINEELDVM----ELLLATSGSKKRSGGKD-DDFVDARELADQLADFNRRAFGA 111

  Fly   517 ------YKLPQDWVKGEEVCCGDDVVVDACQ--------MIDR---------CNPNPCQHKGLCH 558
                  .::.|:..:|..      .::...|        .:||         |...||::.|.|:
  Fly   112 NGLSAMLRVQQNRTRGSM------ALLRRFQTRLRALENRVDRMKTDLEANSCASGPCENGGTCY 170

  Fly   559 QNSREFFCDCGHTGYAGAVCHTSNNPLSCLALKNVQHVQQRVNLNLDVDGSGPLEPFPVTCEFYS 623
            .....|.|.| .:.:.|..|                        .:||:.....|...:.|:   
  Fly   171 NTYTGFRCQC-RSAFEGTKC------------------------EMDVNECALYEGTDLGCQ--- 207

  Fly   624 DGRVITTLSHSQEHTTTVDGFQEPGSFEQSIMYDANQLQIEALLNRSHSCWQRLSYSCRSSRLFN 688
            :|      ...|.|..|.....:||                  .:..| |.||.:...:||    
  Fly   208 NG------GQCQNHFGTYSCLCQPG------------------WHGMH-CTQRKADCSQSS---- 243

  Fly   689 SPSEAGNFRPFSWWISRHNQPMDYWAGALPGSRKCECGILGKC----HDPTKWCNCDSNSLEWME 749
                       :|.:..|                      |.|    .|....|.|:..   |..
  Fly   244 -----------AWELCGH----------------------GSCVPSADDAGYRCICEPG---WKT 272

  Fly   750 DGGDIREKEYLPVRAVKFGDTGTPLDEKMGRYTLGPLRCEGDDLFSNVVTFRIADAS-INLP--- 810
            :|                               |.|:..|..|..|:....:....| ||||   
  Fly   273 NG-------------------------------LTPICGEDVDECSDSAAHKPCSTSCINLPGSF 306

  Fly   811 -----PFDMGHSGDIYLEFRTTQENSVIFHATGPTDYIKLSLNGGNKLQFQYQAGSGPLGVNVGT 870
                 |..:..:|....:....|.|                 |||..|..:...      :|...
  Fly   307 TCAPCPAGLTGNGVSCRDLDECQTN-----------------NGGCSLSPKVDC------INTYG 348

  Fly   871 SYHLND--NNWHTVSVERNRKEARLVVDGSIKAEVRE---PPGPVRALHLTSDLVIGATTEYRDG 930
            |||..:  ..|    ....||..|...|..|.|....   |.|........|..:|..||..|  
  Fly   349 SYHCGECPVGW----TGDGRKCERSPQDIDIPAGQTPRTCPAGNNPCYPTASCFLISGTTSCR-- 407

  Fly   931 YVGCIRALLLNGKMVDLKEYSKRGLYGISTGCVG----RCESNPCLNNGTCIERYDG---YSCDC 988
               |...::..|             || ..|||.    .|:.|||||.|.|:  :.|   |:|.|
  Fly   408 ---CPMGMVGTG-------------YG-PNGCVNGTTTNCKENPCLNGGICL--FAGPSNYTCLC 453

  Fly   989 RWSAFKGPICADEIGVNLRSSSIIRYEFE--GSFRSTIAENIRV-----GFTTTIPKGFLLGFSS 1046
            . ..|:.|||..:      .|...::..:  |..|.|.:.::.|     |:     :|.|.....
  Fly   454 P-IGFRPPICEPQ------PSPCDQHPCKNGGRCRPTTSGDLFVCQCLPGY-----RGRLCETRF 506

  Fly  1047 NLTGEYLTIQISNSGHLRCVFDFGFERQEIIFPKKHFGLGQYHDMH--FMRKNGGSTVVLKVDNY 1109
            :.....|:.|   ||.||             :|.:  |.|..|:..  ::.:...|.||      
  Fly   507 SSCNGMLSAQ---SGRLR-------------YPPE--GTGYEHNAQCAWVIRTNESLVV------ 547

  Fly  1110 EPVEYN-FDIKASADAQFNNIQYMYIGKNESMTDGFVGCVSRVQFDDIYPLKLMFQQNPPKNVKS 1173
             .|.:| ||::.|.:.:|:.:|         :.||                            :|
  Fly   548 -NVTFNSFDVEDSTECRFDWLQ---------INDG----------------------------RS 574

  Fly  1174 LGTQLTEDFCGVEPVTHPP 1192
            ...|:...:||    .|.|
  Fly   575 AAAQIIGRYCG----NHLP 589

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nrx-IVNP_524034.2 FA58C 57..184 CDD:238014
LamG 192..340 CDD:238058
LamG 376..514 CDD:238058 16/55 (29%)
EGF 546..575 CDD:394967 8/28 (29%)
LamG 819..943 CDD:214598 25/128 (20%)
EGF_CA 966..998 CDD:238011 14/34 (41%)
Laminin_G_2 1032..1156 CDD:460494 24/126 (19%)
4.1m 1239..1255 CDD:128590
CubnNP_727348.2 cubilin_NTD 21..149 CDD:412063 22/107 (21%)
EGF_CA 156..190 CDD:238011 10/58 (17%)
EGF_CA 192..233 CDD:238011 11/68 (16%)
EGF_CA 282..322 CDD:214542 9/39 (23%)
EGF_CA 324..367 CDD:214542 13/69 (19%)
EGF 430..457 CDD:394967 12/29 (41%)
EGF_CA 469..503 CDD:238011 7/38 (18%)
CUB 509..622 CDD:238001 28/147 (19%)
CUB 627..737 CDD:238001
CUB 744..849 CDD:412131
CUB 853..970 CDD:238001
CUB 978..1094 CDD:238001
CUB 1100..1211 CDD:238001
CUB 1216..1330 CDD:238001
CUB 1446..1549 CDD:238001
CUB 1554..1667 CDD:238001
CUB 1792..1899 CDD:238001
CUB 1910..1998 CDD:412131
CUB 2019..2133 CDD:238001
CUB 2140..2242 CDD:238001
CUB 2263..2379 CDD:238001
CUB 2385..2511 CDD:238001
CUB 2516..2630 CDD:238001
CUB <2833..2892 CDD:412131
CUB 2898..3008 CDD:238001
CUB 3011..3127 CDD:238001
CUB 3130..3241 CDD:238001
CUB 3254..3363 CDD:238001
CUB 3379..3508 CDD:238001
CUB 3531..3601 CDD:412131
CUB 3623..3733 CDD:238001
Blue background indicates that the domain is not in the aligned region.

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