DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RhoGAP68F and RGA1

DIOPT Version :10

Sequence 1:NP_001401037.1 Gene:RhoGAP68F / 39385 FlyBaseID:FBgn0036257 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_014770.1 Gene:RGA1 / 854294 SGDID:S000005653 Length:1007 Species:Saccharomyces cerevisiae


Alignment Length:499 Identity:103/499 - (20%)
Similarity:190/499 - (38%) Gaps:126/499 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 PQPSLSDLHDFEPKLE--FDDTELLAPSPLEKDVMVGDFVLAE------DPELEPEEDVNPLED- 90
            |:..|.:..:||.:.|  ::::|......|:|:::..:..|.:      :.|.:.||.:..:.: 
Yeast   572 PKTQLENSDNFEEQKETLYENSESRNDPSLDKEIVTAEHYLKQLKINLKELESQREELMKEITEM 636

  Fly    91 -DFEDQLREQSENFQTPRNKCDFLGTDKQGRHIFGIYASRFPEKSQLEGFVREIIKEIEPFVEND 154
             ..::.||...|::.:.:||. :|.::               |.|.....:.||.....|.|   
Yeast   637 KSMKEALRRHIESYNSEKNKL-YLDSN---------------ELSNNPPMINEISLGESPPV--- 682

  Fly   155 YILVYFHQGLKEDNKPSAQFLWNSYKELDRNFRKNLKTLYVVHPTWFIRVIWNFFSPF------- 212
                                             |::.|...|..:......|.|||..       
Yeast   683 ---------------------------------KHVATASSVARSSVKPKFWKFFSSAKPQTEQS 714

  Fly   213 ---ISDKFRKKLVYISSLDELRQALGLNK---------LKLPDNICDLDDKLNPSRKPSTPPPSS 265
               :|......:|..:.:.....:.|.|.         |:.|:...|:  :|.|...      .:
Yeast   715 IQGVSTNNTNSIVKSAPVLLSAPSSGSNSGRLEISPPVLQNPNEFSDV--RLVPIEN------DA 771

  Fly   266 NINASRQQQHKMATTHQFGVPLKFIVMNSPC---LNSIPPIVRKCVDSL-SITGVIDTEGIFRRS 326
            |:..|:..:..:..::.:|..|.     :.|   .|.||.|:..|:|.: |....:.:|||:|:|
Yeast   772 NMGQSKDGEEYLDGSNLYGSSLV-----ARCNYENNEIPMILSVCIDFIESDEENMRSEGIYRKS 831

  Fly   327 GN-------HSEIMALKERVNRGEDVDLKSVNVHVIAGLLKSFLRDLAEPLLTFELYED------ 378
            |:       ..:..|.|.:.|......|...:::|:.|:||.:||.|..|:.||::||.      
Yeast   832 GSQLVIEEIEKQFSAWKVQQNTETPNILTEQDLNVVTGVLKRYLRKLPNPIFTFQIYEPLMRLVK 896

  Fly   379 ----------VTGFLDWPKEE-----RSRNVTQLIREKLPEENYELFKYIVEFLVRVMDCEDLNK 428
                      |.|.|....:.     .|::..:.|.|.||.|:|.:.:.:.|.:.:|......|:
Yeast   897 SKKMMENLPFVGGKLSLEAKNSDTYMSSKSALKNILEDLPREHYRVLRVLSEHIEKVTRYSHWNR 961

  Fly   429 MTSSNLAIVFGPNFLWSRSTSTSLEEIAPINAFVDFVLQNHKDI 472
            ||..|||:||.|..:...|....:.::...|..|.|:..|:|||
Yeast   962 MTLYNLALVFAPGLIRDFSGEKDIIDMKERNYIVAFIFGNYKDI 1005

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP68FNP_001401037.1 CRAL_TRIO_2 119..242 CDD:463965 18/141 (13%)
RhoGAP-p50rhoGAP 278..473 CDD:239869 61/227 (27%)
RGA1NP_014770.1 LIM1_Rga 13..67 CDD:188780
LIM2_Rga 70..123 CDD:188781
RhoGAP 803..1002 CDD:214618 53/198 (27%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.