DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGAP68F and arhgap8

DIOPT Version :9

Sequence 1:NP_001261744.1 Gene:RhoGAP68F / 39385 FlyBaseID:FBgn0036257 Length:476 Species:Drosophila melanogaster
Sequence 2:NP_001016951.1 Gene:arhgap8 / 549705 XenbaseID:XB-GENE-6455435 Length:420 Species:Xenopus tropicalis


Alignment Length:439 Identity:159/439 - (36%)
Similarity:235/439 - (53%) Gaps:52/439 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 DTELLAPSPLEKDVMVGDFVLAEDPELEPEEDVNPLEDDFEDQLREQSE------NFQTPRNK-C 101
            |.|.||...|:||                |||:..|........|:.|:      .:...|:. .
 Frog     5 DFEKLAEIELQKD----------------EEDLEYLGPPVVSGGRKPSDVCIGHPYYDIARHGIL 53

  Fly   102 DFLGTDKQGRHIFGIYASRFPEKSQLEGFVR--EIIKE-IEPFVENDYILVYFHQGLKEDNKPSA 163
            ..:|.|..||.:......|.|...::: .||  :.:|. ::.:|||||.|||||.||...||||.
 Frog    54 HVVGDDNSGRKVITFSCCRLPPCHEID-HVRLLQYMKHTLDQYVENDYTLVYFHYGLNSRNKPSL 117

  Fly   164 QFLWNSYKELDRNFRKNLKTLYVVHPTWFIRVIWNFFSPFISDKFRKKLVYISSLDELRQALGLN 228
            .:|.::|||.||.::||||.|||||||.||:|:||.|.|.||.||.||::|:..|:||.:.|..|
 Frog   118 GWLQSAYKEFDRKYKKNLKALYVVHPTNFIKVLWNIFKPIISHKFGKKVLYMKDLNELHEHLKFN 182

  Fly   229 KLKLPDNICDLDDKLNPSR-KPS---TPPPSSNINASRQQQHKMATTHQFGVPLKFIVMNSPCLN 289
            :|.:|..:...|:||...: |||   :|||...:           .|.||||.|::| .|....:
 Frog   183 RLIIPPEVLQHDEKLRAHKGKPSSAKSPPPRPPL-----------PTQQFGVTLQYI-RNKNNGD 235

  Fly   290 SIPPIVRKCVDSLSITGVIDTEGIFRRSGNHSEIMALKERVNRGEDVDLKSV-NVHVIAGLLKSF 353
            .|||::.:.:..|...| :.|||:||||.:...:..:::..|.|:.|:..:. |:|:.|.:||:|
 Frog   236 LIPPVMVQTISYLKQKG-LRTEGLFRRSVSVHILKDVQKLYNVGKPVNFDTYDNIHIPAVILKTF 299

  Fly   354 LRDLAEPLLTFELY---EDVTGFLDWPKEERSRNVTQLIREKLPEENYELFKYIVEFLVRVMDCE 415
            ||:|.|||||::.|   :|:.|.....:..|.|.:.|    ||||.||.:.||::.||..|....
 Frog   300 LRELPEPLLTYDSYGPIQDIIGVESSLRVTRCRQIVQ----KLPEHNYAVLKYLLCFLHLVCQQH 360

  Fly   416 DLNKMTSSNLAIVFGPNFLWSRSTSTSLEEIAPINAFVDFVLQNHKDIY 464
            ..||||||||..:||.|.:|.|....||..:.|:|.|.:.:::.:..|:
 Frog   361 IHNKMTSSNLGCIFGLNLIWQREQIQSLNALVPVNLFAELLIEFYPQIF 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP68FNP_001261744.1 SEC14 105..233 CDD:238099 62/130 (48%)
RhoGAP-p50rhoGAP 269..464 CDD:239869 72/198 (36%)
arhgap8NP_001016951.1 CRAL_TRIO_2 62..184 CDD:290435 59/122 (48%)
RhoGAP 218..409 CDD:295372 72/196 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1511935at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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