DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGAP68F and rga-1

DIOPT Version :9

Sequence 1:NP_001261744.1 Gene:RhoGAP68F / 39385 FlyBaseID:FBgn0036257 Length:476 Species:Drosophila melanogaster
Sequence 2:NP_001022390.1 Gene:rga-1 / 174751 WormBaseID:WBGene00012203 Length:444 Species:Caenorhabditis elegans


Alignment Length:467 Identity:166/467 - (35%)
Similarity:247/467 - (52%) Gaps:47/467 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 VDNSDEPQPS-LSD----LHDFEPKLE-FDDTELLAPSPLEKDV--MVGDFVLAEDPELEPE-ED 75
            :|....|.|| .||    |.:||..:: :.|.:||.|..|...|  |.......|..|.|.| ..
 Worm     1 MDTKHPPDPSGPSDPNINLGEFEDPVDGYADDDLLTPDDLSVSVTGMTPSRSFLETEEFETELGG 65

  Fly    76 VNPLEDDFEDQLREQSENFQTPRNKCDFLGTDKQGRHIFGIYASRFPEKSQLE--GFVREIIKEI 138
            |.|.||.|.|  ....|..|.      ....|:.||.|..:||.|.|...:::  ..::.:::.|
 Worm    66 VEPFEDLFND--ISAHEIIQV------IADGDRVGRPIVVVYAYRLPSSKEIDHARLLQYLVQII 122

  Fly   139 EPFVENDYILVYFHQGLKEDNKPSAQFLWNSYKELDRNFRKNLKTLYVVHPTWFIRVIWNFFSPF 203
            :..|:.||.:||||.||:..|||..::|:.:||:|||.|:||||.|||||||.|||:|::.|..|
 Worm   123 DKIVDQDYTIVYFHYGLRSHNKPPVRWLFQAYKQLDRRFKKNLKALYVVHPTRFIRIIFSLFKGF 187

  Fly   204 ISDKFRKKLVYISSLDELRQALGLNKLKLPDNICDLDDKLN-PSRKPSTPPPSSNINASRQQQHK 267
            ||.||..|..|:..:|||..||.:.:|.||..|.|.|...: .|.:|.|||.            :
 Worm   188 ISSKFENKFHYVMCIDELENALSVARLNLPSPIRDHDKSFSTQSNRPETPPA------------Q 240

  Fly   268 MATTHQFGVPLKFIVMNSPCLNSIPPIVRKCVDSLSITGVIDTEGIFRRSGNHSEIMALKERVNR 332
            ...|.||||||:||:  |.|..:|||||.:.::.|. ...:..||:||:|.|...|..|::|:|:
 Worm   241 PLPTQQFGVPLEFIL--SHCGGNIPPIVDQLIEYLE-AHALTMEGVFRKSANIGSIKRLQDRINK 302

  Fly   333 GEDVDLKS----------VNVHVIAGLLKSFLRDLAEPLLTFELYEDVTGFLDWPKEERSRNVTQ 387
            ||.:|.::          .::|. :.|||:|.|.|.|||.|..||..:....:..|.|:|..|.:
 Worm   303 GEKIDFENDPEYKDNEYVASLHA-SVLLKTFFRSLGEPLTTNRLYPKLAALSEVSKTEKSAAVKE 366

  Fly   388 LIREKLPEENYELFKYIVEFLVRVMDCEDLNKMTSSNLAIVFGPNFLWSRSTSTSLEEIAPINAF 452
            .:: .||.|||.|.|.:::||.||.:...:|.||::||::|||||..|.......:.::..:|.|
 Worm   367 FVK-LLPRENYILLKTVIKFLTRVAENSKVNLMTANNLSVVFGPNLTWPTDQEVPISQLNNLNNF 430

  Fly   453 VDFVLQNHKDIY 464
            ...::.::..::
 Worm   431 CYKLIVDYDSVF 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP68FNP_001261744.1 SEC14 105..233 CDD:238099 57/129 (44%)
RhoGAP-p50rhoGAP 269..464 CDD:239869 71/204 (35%)
rga-1NP_001022390.1 SEC14 74..225 CDD:214706 64/158 (41%)
RhoGAP 242..442 CDD:383032 71/204 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160162253
Domainoid 1 1.000 124 1.000 Domainoid score I3437
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H20909
Inparanoid 1 1.050 255 1.000 Inparanoid score I1960
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG52084
OrthoDB 1 1.010 - - D1511935at2759
OrthoFinder 1 1.000 - - FOG0002972
OrthoInspector 1 1.000 - - oto19787
orthoMCL 1 0.900 - - OOG6_103505
Panther 1 1.100 - - LDO PTHR45808
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4738
SonicParanoid 1 1.000 - - X3319
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1413.940

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