DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DEF8 and rubcn

DIOPT Version :10

Sequence 1:NP_648549.1 Gene:DEF8 / 39381 FlyBaseID:FBgn0046296 Length:492 Species:Drosophila melanogaster
Sequence 2:XP_005174116.1 Gene:rubcn / 100000896 ZFINID:ZDB-GENE-100922-142 Length:930 Species:Danio rerio


Alignment Length:497 Identity:127/497 - (25%)
Similarity:213/497 - (42%) Gaps:122/497 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 ASSTLGSTVGLGGSGSTGSG----SEAGGSEE-------SGPQGAEYRALP---IPASLVREQWR 79
            |||....:|..|||..:...    |::|...|       .|..|....|:.   :..||..    
Zfish   504 ASSNQVQSVDSGGSQRSSQDSFHPSDSGSDREVEDIELRDGSDGQSLLAVSQSGLSLSLAS---- 564

  Fly    80 LIFTSDANIQDLQAAIAHCRDLVLLSEELSEERRWLVRHLVDLRYSLQELEEAQEQHSLSSDMVV 144
             :| |||   |::.:.:..|.. |.||.:|..             .||         |.|::.|.
Zfish   565 -LF-SDA---DIKRSASSSRSF-LSSESISPS-------------MLQ---------SNSAESVA 601

  Fly   145 MNAIRAVVGHH---------FVPHH----------------PHHGK-----RNRLQAAAKRNYCD 179
            |..:|...|..         .||.|                |..|:     :.|::......:..
Zfish   602 MGLLRQFEGMQLPAASELDWLVPEHDAPQKLLPIPDSLPISPDDGEHADIYKLRIRVRGNLEWAP 666

  Fly   180 HCTTIIWSVVQNSYVCSDCGFLVHQKCIDGVKRVCAHVLVSERQHPISEICPEIGLASQGYKCAE 244
            ....||:::                                   ||..:  .::.:|.|.|:||.
Zfish   667 PRPQIIFNI-----------------------------------HPPPK--RKVVIAKQNYRCAG 694

  Fly   245 CGTMLNIKNTWIEP-RLCDYSGLYYCPRCNWNDSNFIPARIIHNWDFSPRRVSRTALQEIRLFLN 308
            ||  :.|:..:::. |.|:|.|.|:|..|:.|..:.|||:||..||||...||..:...:.....
Zfish   695 CG--IRIEQDYMKRLRYCEYLGRYFCQCCHENAQSVIPAKIIRKWDFSKSYVSNFSRDLLAKISG 757

  Fly   309 KPLIRLEEDNPKLFVFVEKLCAVKKLRQNLVHMRHYLAACKIASE-LKLVDQQLGVRRHLAQSNE 372
            .||..|.:.|..|:..|:.|..|:.||:.|..|::.|..|::|.: |:..|..|  ..||.:..:
Zfish   758 DPLFNLSDINSALYKKVKALDTVRALREQLNLMKNLLKTCRLAKDVLEEFDSLL--PGHLTEDMQ 820

  Fly   373 FYSLSDLSQVESGALSEFLQGVFKAFNDHIRSCPMCLAQAYICEICSNN-EVIFPFD-DGCIKCD 435
            .:|||||:.|.||:|:..|:.:.:..:.|:..|.:|.|:.:|||.|.|: ::|||:: :.|::|:
Zfish   821 LFSLSDLNAVRSGSLTPQLRHLLRLGSTHVTHCMLCQAKGFICEFCGNDKDIIFPYELNKCLRCE 885

  Fly   436 QCNSIFHRVCLTRKNMICPKCIRIQERRLQLDRMKSTEDDDD 477
            .|::.:|:.|. :....||:|:|:.|||.::.|....|.:|:
Zfish   886 DCHACYHKSCF-KTGTQCPRCLRLTERRERMARRNMEEQEDE 926

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DEF8NP_648549.1 C1_DEF8 <173..219 CDD:410369 2/45 (4%)
zf-RING_9 259..461 CDD:464030 70/204 (34%)
rubcnXP_005174116.1 RUN_RUBCN 24..178 CDD:439048
zf-RING_9 708..910 CDD:464030 70/204 (34%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.