DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir68b and Samd3

DIOPT Version :9

Sequence 1:NP_648548.1 Gene:Ir68b / 39378 FlyBaseID:FBgn0036250 Length:635 Species:Drosophila melanogaster
Sequence 2:NP_001165587.1 Gene:Samd3 / 685940 RGDID:1587834 Length:273 Species:Rattus norvegicus


Alignment Length:72 Identity:21/72 - (29%)
Similarity:27/72 - (37%) Gaps:25/72 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 HE--LEPFRRTDSLSIFQIPAAEKGDSLVRRILDMLNPHQRR--KHMHKYLFVWPNAGRHQLLRL 136
            ||  |.|....|..|::  ||.     |..|::|.....|||  ||:         ..||:.|. 
  Rat    91 HERNLSPTSHGDQTSLY--PAV-----LDNRLIDQRVLKQRRNVKHV---------LARHKALH- 138

  Fly   137 FRGSWAK 143
                |.|
  Rat   139 ----WTK 141

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir68bNP_648548.1 Lig_chan 333..607 CDD:278489
Samd3NP_001165587.1 SAM 1..66 CDD:197735
SAM_superfamily 1..65 CDD:301707
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1945
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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