DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir68b and grid1b

DIOPT Version :9

Sequence 1:NP_648548.1 Gene:Ir68b / 39378 FlyBaseID:FBgn0036250 Length:635 Species:Drosophila melanogaster
Sequence 2:XP_009304811.1 Gene:grid1b / 557511 ZFINID:ZDB-GENE-121214-84 Length:1048 Species:Danio rerio


Alignment Length:498 Identity:96/498 - (19%)
Similarity:170/498 - (34%) Gaps:128/498 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   178 EVPYARKVKDLRGYPLRFSMFT-DPLMAMPRSPVETAGYQAVDGVAARVVGEMLNASVTYVFPED 241
            |.|:....:::.|.|.|:..|: |.|.|:                 |:::|...:     ::...
Zfish   447 EDPFVMVAENILGQPKRYKGFSIDVLEAL-----------------AKILGFKYD-----IYQVA 489

  Fly   242 NESYGRCLPNGNYTGVVSDIVGGHTHFAPNSRFVLDCIWPAVEVLYPYTRRNLHLVVPASAIQPE 306
            :..||..|.||::.|::.:::......|.::    ..|.|..|.:..:::|.:...|.....:||
Zfish   490 DSKYGSQLSNGSWNGMIGELINKRADLAVSA----ITITPERENVVDFSKRYMDYSVGILHRKPE 550

  Fly   307 YLIFV----RVFRRTVWYLLLVTLLVV-VLVFWV--MQRLQRRIP-------RRGVIQFQATWY- 356
            ..|.:    ..|...||..:...:.|| ||:|.:  ||.|:.:.|       ........|.|. 
Zfish   551 EKINIFSLFAPFDLAVWACIAAAIPVVGVLIFLLTRMQMLRSQNPPGAHHASSMSNSLHSAIWIV 615

  Fly   357 --EILEMFGKTHVGEPAGRLSSFSSMRTFLMG-WILFSYVLSTIYFAKLESGFVRPSYEEQVDRV 418
              ..::..|.:.||..|.|:         :|| |.||:.::.:.|.|.|.:.......:..:...
Zfish   616 YGAFVQQGGDSVVGSVALRI---------VMGSWWLFTLIVCSSYTANLAAFLTVSRMDNTIRTF 671

  Fly   419 DDLVHLDVHIYAV---TTMYDAVRSALTEHQYGLLENRSRQLPL--------GIATSYYQPV--V 470
            .||.......|..   :.:||..::..|..    ||..|....|        |...|...|.  :
Zfish   672 QDLARQMDFAYGTVRDSAVYDYFKAKGTNP----LEQDSTYAELWRTISKNNGQDFSVSSPSEGI 732

  Fly   471 RRRDRRAAFIMRDFHARDFLAITYD--------SQAERPAYHIAREYLRSMICTYILPRGSPFLH 527
            |:..:.....:.|....::.|:|.|        :......|.||.::            |||:..
Zfish   733 RKAKKGPYAFLWDMAVVEYAALTDDDCTITVSGNSMSSKGYGIAMQH------------GSPYRD 785

  Fly   528 RLESLYSGFLEHGFFEHWRQ--------MDLITRVGASPDAEEFLEDLGDQTDTDSGSNELAIRN 584
            .:........|.|..:..:|        .||.:...|.||...                      
Zfish   786 LISQKILELQEKGDLDVLKQKWWPRTGRCDLNSHSNAQPDGRS---------------------- 828

  Fly   585 KKVVLTLDILQGAFYLWSVGIGISCLGFAVEHAHWFWRRQTLR 627
                |.|....|.|.:.:.|:.::||..|:|   .:|.....|
Zfish   829 ----LKLHSFAGVFCILAAGLLLACLVAALE---MWWNSNRCR 864

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir68bNP_648548.1 Lig_chan 333..607 CDD:278489 57/315 (18%)
grid1bXP_009304811.1 PBP1_iGluR_delta_1 25..424 CDD:107387
ANF_receptor 36..400 CDD:279440
Periplasmic_Binding_Protein_Type_2 437..809 CDD:304360 80/412 (19%)
Lig_chan 565..840 CDD:278489 62/325 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591156
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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