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Protein Alignment Ir68b and Grik2

DIOPT Version :9

Sequence 1:	NP_648548.1	Gene:	Ir68b / 39378	FlyBaseID:	FBgn0036250	Length:	635	Species:	Drosophila melanogaster
Sequence 2:	NP_062182.1	Gene:	Grik2 / 54257	RGDID:	2733	Length:	908	Species:	Rattus norvegicus

Alignment Length:	580	Identity:	96/580 - (16%)
Similarity:	172/580 - (29%)	Gaps:	213/580 - (36%)

- Green bases have known domain annotations that are detailed below.

  Fly    47 FDADYSALELDLYRCVGSRLPVITRNM-EAHELEPFRRTDSLSIFQIPAAEKGDSLVRRILDMLN 110
            ||.|..:|:.:....:|:..|....|| |:.:.:|...|||||        ....:|..||:
  Rat   387 FDLDVISLKEEGLEKIGTWDPASGLNMTESQKGKPANITDSLS--------NRSLIVTTILE--- 440

  Fly   111 PHQRRKHMHKYLFVWPNAGRHQLLRLFRGSWAKKLLYGLAITGRENGTFDFDPFAWGGLQVIQRL 175
                    ..|:             ||:.|  .|.|||                       ..|.
  Rat   441 --------EPYV-------------LFKKS--DKPLYG-----------------------NDRF 459

  Fly   176 DGE-VPYARKVKDLRGYPLRFSMFTDPLMAMPRSPVETAGYQAVDGVAARVVGEMLNASVTYVFP 239
            :|. :...|::..:.|:.....:            ||...|.|.|.|
  Rat   460 EGYCIDLLRELSTILGFTYEIRL------------VEDGKYGAQDDV------------------ 494

  Fly   240 EDNESYGRCLPNGNYTGVVSDIVGGHTHFAPNSRFVLDCIWPAVEVLYPYTRRNLHLVV-PASAI 303
                       ||.:.|:|.:::......|.....:.......::...|:....:.::. ..:..
  Rat   495 -----------NGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGT 548

  Fly   304 QPEYLIFVRVFRRTVWYLLLVTLLVVVLVFWVMQRLQRRIPRRGVIQFQATWYEILEMFGKTHVG 368
            .|....|:......:|..:|:..|.|..|.:|:.|..           ...||       ..|..
  Rat   549 NPGVFSFLNPLSPDIWMYVLLACLGVSCVLFVIARFS-----------PYEWY-------NPHPC 595

  Fly   369 EPAGRL--SSFSSMRTFLMG------------------------WILFSYVLSTIYFAKLESGFV 407
            .|...:  ::|:.:.:|..|                        |..|:.::.:.|.|.|.:...
  Rat   596 NPDSDVVENNFTLLNSFWFGVGALMRQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLT 660

  Fly   408 RPSYEEQVDRVDDLVHLDVHIYAVTTMYDAVRSALTEHQYGLLENRSRQLPLGIATSYYQPVVRR 472
            ....|..:|..|||                  :..|:.:||.:|
  Rat   661 VERMESPIDSADDL------------------AKQTKIEYGAVE--------------------- 686

  Fly   473 RDRRAAFIMRDFHARDFLAITYDSQAERPAYHIAREYLRSMICTYILPRGSPFLHR-LESLYSGF 536
                           |...:|:..:::...|.....::.|...:.::......:.| |.|.|:..
  Rat   687 ---------------DGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFL 736

  Fly   537 LEHGFFEHWRQMDL-ITRVGASPDAEEFLEDLGDQTDTDSGSNELAIRNKKVVLTLDILQ 595
            :|....|...|.:. :|::|...|::      |....|..||   ..|:|   :|:.|||
  Rat   737 MESTTIEFVTQRNCNLTQIGGLIDSK------GYGVGTPMGS---PYRDK---ITIAILQ 784

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.