DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir68b and Ekar

DIOPT Version :9

Sequence 1:NP_648548.1 Gene:Ir68b / 39378 FlyBaseID:FBgn0036250 Length:635 Species:Drosophila melanogaster
Sequence 2:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster


Alignment Length:674 Identity:119/674 - (17%)
Similarity:209/674 - (31%) Gaps:210/674 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 NMEAHELEPFRR--TDSLSIFQIPAAEKGDSLVRRILDMLNPHQRRK-----HMHK--------- 120
            ::|.::||.|:.  .:..|...:..|:.|...:.:.:.:.:.|..:|     |:.|         
  Fly   232 DLETYDLEDFKYNFVNITSFRLVDTADVGVKQILKDIGLYSHHIFKKPYLNLHIKKSTILESEPA 296

  Fly   121 ------YLFVWPNAGRHQLLRLFRGSWAKKLLYGLAITGRENGTFDFDPFAWGGLQVIQRLDGEV 179
                  |:|.   .|    |:....|.:..|   |.|:..|..::|      |||.:|..|:   
  Fly   297 LMFDSVYVFA---IG----LQTLEQSHSLTL---LNISCEEENSWD------GGLSLINYLN--- 342

  Fly   180 PYARKVKDLRGYPLRFS-----MFTDPLMAMPRSPVETAGYQAVDGVAARVVGEML----NASVT 235
              |.:.|.|.| |::|.     .|...|:.:.:..:...|.....|........|.    :.:||
  Fly   343 --AVEWKGLTG-PIQFKDGQRVQFKLDLIKLKQHSIVKVGEWTPHGHLNITEPSMFFDAGSMNVT 404

  Fly   236 YV-----------------FPEDNESYGRCL-----------------------------PNGNY 254
            .|                 |..:...||.|:                             ..|.:
  Fly   405 LVVITILETPYVMMHYGKNFTGNERFYGFCVDILETISREVGFDYILDLVPDRKYGAKDPETGEW 469

  Fly   255 TGVVSDIVGGHTHFAPNSRFVLDCIWPAVEVLYPYTRRNLHLVVPASAIQPEYLI-FVRVFRRTV 318
            .|:|:.::......|..|..:.......::...|:....:.::......:|..|. |:......:
  Fly   470 NGMVAQLMKYKADLAVGSMTITYARESVIDFTKPFMNLGISILFKVPTSEPTRLFSFMNPLAIEI 534

  Fly   319 WYLLLVTLLVVVLVFWVMQRLQRRIPRRGV-----------IQFQAT---WYEILEMFGKTHVGE 369
            |..:|:...:|.|..:::.:|. .|..:.:           .||..|   |:.|     .|.:.:
  Fly   535 WIYVLIAYFLVSLCIYIVGKLS-PIEWKCINACDLENISIGNQFSLTDSFWFTI-----GTFMQQ 593

  Fly   370 PAGRLSSFSSMRTFLMGWILFSYVLSTIYFAKLESGFVRPSYEEQVDRVDDLVHLDVHIYAVTTM 434
            .........|.|.....|..||.::...|.|.|.:..........::..:||             
  Fly   594 SPDIYPRAMSTRIISSTWGFFSLIIVASYTANLAAFLTTERMINPIENAEDL------------- 645

  Fly   435 YDAVRSALTEHQYGLLENRS---------------------RQLPLGIATSYYQPVVRRRDRRAA 478
                 ::.||..||.|::.|                     .:.|....|:|...:.|......|
  Fly   646 -----ASQTEISYGTLDSGSTMTFFRDSVIETYKKIWRSMDNKKPSAFTTTYEDGIKRVNQGNYA 705

  Fly   479 FIMR----DFHA-RDFLAITYDSQAERPAYHIAREYLRSMICTYILPRGSPF-----LHRLESLY 533
            |:|.    |:.. ||..........:...|.||            .|:|||:     |..||...
  Fly   706 FLMESTMLDYIVQRDCNLTQIGGLLDTKGYGIA------------TPKGSPWRDKISLAILELQE 758

  Fly   534 SGFLEHGFFEHWRQMD-LITRVGASPDAEEFLEDLGDQTDTDSGSNELAIRNKKVVLTLDILQGA 597
            .|.::..:.:.|:..| ..||               ..|...|.:|.|.         |:.:.|.
  Fly   759 RGDIQMLYDKWWKNTDETCTR---------------KNTSKQSKANSLG---------LESIGGV 799

  Fly   598 FYLWSVGIGISCLGFAVEHAHWFW 621
            |.:...||.::    ||.....||
  Fly   800 FVVLIAGIIVA----AVVAFFEFW 819

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir68bNP_648548.1 Lig_chan 333..607 CDD:278489 58/319 (18%)
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..388 CDD:107377 36/177 (20%)
ANF_receptor 39..371 CDD:279440 34/160 (21%)
PBP2_iGluR_Kainate 402..771 CDD:270432 65/404 (16%)
Lig_chan 533..807 CDD:278489 60/333 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45463130
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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