DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir68b and gria1b

DIOPT Version :9

Sequence 1:NP_648548.1 Gene:Ir68b / 39378 FlyBaseID:FBgn0036250 Length:635 Species:Drosophila melanogaster
Sequence 2:NP_991293.1 Gene:gria1b / 403044 ZFINID:ZDB-GENE-020125-2 Length:917 Species:Danio rerio


Alignment Length:806 Identity:131/806 - (16%)
Similarity:250/806 - (31%) Gaps:297/806 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 YLYRCASCPASFDADYSALELDLYRCVGSRLPVITRNM----EAHELEPFRRTDSLSIFQIPAAE 96
            |:|       |.|:..:.|:..|.........|.:.|.    ||..|:..:..|:...|:|..  
Zfish   146 YMY-------SSDSGLTVLQKILDTAAEKTWQVTSINFDTLTEAAFLKAIQDLDNKKEFKIIL-- 201

  Fly    97 KGDSLVRRILDMLN-PHQRRKHMHKYLFVWPNAGRHQL-LRLFRGSWAKKLLYGLAITGRENGT- 158
              |..:.|:..:|| ...::|::..|.::..|.|...| |..||...|.  :.|..:....|.| 
Zfish   202 --DCELERLNSILNLIAAQKKNLKNYHYILANLGFLDLNLTEFRKGGAN--VTGFQLMNYTNPTV 262

  Fly   159 -------FDFD---------------PFAWGGLQVI---------QRLD-------GE------V 179
                   .:||               ...:.|:.|:         ||:|       ||      .
Zfish   263 SRTIQDWLEFDSKDLKSPKRRLKYTGALTYDGVTVMATAFQNLRKQRIDISRRGNAGECLANPPA 327

  Fly   180 PYARKV-----------KDLRGYPLRF------SMFTDPLMAMPRSPVETAGY--QAVDGVAARV 225
            |:.:.:           :.|.|: ::|      :.||..:|....|..:..||  |....|:...
Zfish   328 PWGQGIDIQRALQQVQFEGLTGH-VQFNDKGHRTNFTVSVMEFGPSGPKKVGYWNQREKYVSTAT 391

  Fly   226 VGEMLNASV-----TYVFPE-----------------DNESY-GRCLP----------------- 250
            ...|||.:.     |||...                 .|:.| |.|:.                 
Zfish   392 YSNMLNETFGLQNRTYVVTTILEAPYVMLKKNHEQLVGNDKYEGYCVELAAEIAKHVGYSYRLEL 456

  Fly   251 --NGNY----------TGVVSDIVGGHTHFAPNSRFVLDCIWPAVEVLYPYTRRNLHLVV--PAS 301
              :|.|          .|:|.::|.|....|.....:.......::...|:....:.:::  |..
Zfish   457 VGDGKYGARDAETMMWNGMVGELVYGKADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPTK 521

  Fly   302 AIQPEYLIFVRVFRRTVWYLLLVTLLVVVLVFWVMQRL--------------------------- 339
            : :|....|:......:|..::...:.|.:|.:::.|.                           
Zfish   522 S-KPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHADDEEETADQQNQNQPPSPEP 585

  Fly   340 --------------QRRIPRR----GVIQFQATWYEILEMFGKTHVGEPAGRLSSFSSMRTFLMG 386
                          |.:.|..    |:  |.:.|:.:.....:       |...|..|:...::|
Zfish   586 NQSPNQSQNQREEKQEKQPEHTNEFGI--FNSLWFSLGAFMQQ-------GCDISPRSLSGRIVG 641

  Fly   387 --WILFSYVLSTIYFAKLESGFVRPSYEEQVDRVDDLVHLDVHIYAVTTMYDAVRSALTEHQYGL 449
              |..|:.::.:.|.|.|.:..........::..:||                  :..||..||.
Zfish   642 GVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDL------------------AKQTEIAYGT 688

  Fly   450 LENRSRQLPLGIATSYYQPVVRRRDRRAAFIMRDFHARDFLAITYDSQAERPAYHIAREYLRSMI 514
            |:..|                          .::|..|..:|:          :.....|::|..
Zfish   689 LDGGS--------------------------TKEFFRRSKIAV----------FEKMWSYMKSAE 717

  Fly   515 CTYIL---PRGSPFLHRLESLYSGFLE---HGFFEHWRQMDLITRVGASPDAEEF---------- 563
            .|..:   ..|...:.:.:..|:..||   :.:.|..:..|.: :||.:.|::.:          
Zfish   718 PTVFVKTTDEGVVRVRKSKGKYAYLLESTMNEYIEQRKPCDTM-KVGGNLDSKGYGVATPKGSAL 781

  Fly   564 ----------LEDLG-----------DQTDTDSGSNELAIRNKKVVLTLDILQGAFYLWSVGIGI 607
                      |.:.|           |:.:..||..:  .::|...|:|..:.|.||:...|:|:
Zfish   782 RNPVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGD--SKDKTSALSLSNVAGVFYILIGGLGL 844

  Fly   608 SCLGFAVEHAHWFWRRQTLRNAVEAR 633
            :.|...||..:        ::.:|:|
Zfish   845 AMLVALVEFCY--------KSRIESR 862

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir68bNP_648548.1 Lig_chan 333..607 CDD:278489 50/357 (14%)
gria1bNP_991293.1 PBP1_iGluR_AMPA_GluR1 26..387 CDD:107385 50/254 (20%)
ANF_receptor 41..368 CDD:279440 45/235 (19%)
PBP2_iGluR_AMPA_GluR1 404..812 CDD:270447 62/472 (13%)
Lig_chan 536..842 CDD:278489 52/371 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591508
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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