DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir68b and Nmdar2

DIOPT Version :9

Sequence 1:NP_648548.1 Gene:Ir68b / 39378 FlyBaseID:FBgn0036250 Length:635 Species:Drosophila melanogaster
Sequence 2:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster


Alignment Length:687 Identity:137/687 - (19%)
Similarity:217/687 - (31%) Gaps:200/687 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 FDADYSALELDLYRCVGSRLPVITRNMEAHELEPFRR-----TDSLS-------------IF--- 90
            ||...:||..:    :.:.:.:.:..:||:..:|..|     |.|||             ||   
  Fly   363 FDTSSAALMNE----ISNAIKIYSYGVEAYLTDPANRDRRLTTQSLSCEDEGRGRWDNGEIFFKY 423

  Fly    91 -------------QIPAAEKGD--SLVRRILDMLNPHQRRKHMHKYLFVWPNAGRHQLLRLFRGS 140
                         .|.....||  |...:|:: |.|....|::     ||...|..:       |
  Fly   424 LRNVSIEGDLNKPNIEFTADGDLRSAELKIMN-LRPSANNKNL-----VWEEIGVWK-------S 475

  Fly   141 WAKKLLYGLAITGRENGTFDFDPFAWGGLQVIQRLDGEVPYARKVKDLRGYPLRFSM---FTDPL 202
            |             |....|....||.|       :...|       .:|.|.:|.:   |.:..
  Fly   476 W-------------ETQKLDIRDIAWPG-------NSHAP-------PQGVPEKFHLKITFLEEA 513

  Fly   203 MAMPRSPVE-TAGYQAVD-GVAARVVGE-MLNASVTYVFPEDNESYGRC---------------- 248
            ..:..||.: .:|...:| ||..||..: .:.|.:.......|||:.:|                
  Fly   514 PYINLSPADPVSGKCLMDRGVLCRVAADHEMAADIDVGQAHRNESFYQCCSGFCIDLLEKFAEEL 578

  Fly   249 ----------------LPNGNYTGVVSDIVGGHTHFAPNSRFVLDCIWPAVEVLYPYTRRNLHLV 297
                            |.||.:.|:::|:|...|.....|..:.......|:...|:....:.:|
  Fly   579 GFTYELVRVEDGKWGTLENGKWNGLIADLVNRKTDMVLTSLMINTEREAVVDFSEPFMETGIAIV 643

  Fly   298 VP--ASAIQPEYLIFVRVFRRTVWYLLLVTLL-----VVVLVFWVMQR-------LQRR--IPRR 346
            |.  ...|.|  ..|:..|....|.|:.:..:     ::.|..|:...       ||..  .|.|
  Fly   644 VAKRTGIISP--TAFLEPFDTASWMLVGIVAIQAATFMIFLFEWLSPSGYDMKLYLQNTNVTPYR 706

  Fly   347 GVIQFQATWYEILEMF-GKTHVGEPAGRLSSFSSMRTFLMGWILFSYVLSTIYFAKLESGFVRPS 410
            ..: |:..|.....:| ...||..|.|..|.|.:     ..|.||:.|...||.|.|.:..:...
  Fly   707 FSL-FRTYWLVWAVLFQAAVHVDSPRGFTSRFMT-----NVWALFAVVFLAIYTANLAAFMITRE 765

  Fly   411 YEEQVDRVDD--LVHLDVHIYAV---TTMYDAVRSALTEHQY-GLLENRSRQLPLGIATSYYQPV 469
            ...:...::|  |||...|..:.   |..|....|  |.|:| .::.|..||..   .||....|
  Fly   766 EFHEFSGLNDSRLVHPFSHKPSFKFGTIPYSHTDS--TIHKYFNVMHNYMRQYN---KTSVADGV 825

  Fly   470 VRRRDRRAAFIMRDFHARDFLA--------ITYDSQAERPAYHIAREYLRSMICTYILPRGSPFL 526
            ....:......:.|....|:|.        :|..|......|.:|            ..|.|.::
  Fly   826 AAVLNGNLDSFIYDGTVLDYLVAQDEDCRLMTVGSWYAMTGYGLA------------FSRNSKYV 878

  Fly   527 HRLESLYSGFLEHGFFEHWRQ--MDLITRVGASPDAEEFLEDLGDQTDTDSGSNELAIRNKKVVL 589
            .........|..:|..|..|:  |....|.|..           :...:|.             |
  Fly   879 QMFNKRLLEFRANGDLERLRRYWMTGTCRPGKQ-----------EHKSSDP-------------L 919

  Fly   590 TLDILQGAFYLWSVGIGISCLGFAVEHAHWFWRRQTL 626
            .|:....||.|...||.::.|...:||.::.:.|:.|
  Fly   920 ALEQFLSAFLLLMAGILLAALLLLLEHVYFKYIRKRL 956

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir68bNP_648548.1 Lig_chan 333..607 CDD:278489 63/299 (21%)
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..490 CDD:107373 31/156 (20%)
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 87/430 (20%)
Lig_chan 665..928 CDD:278489 61/309 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45463098
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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