DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir68b and Grik3

DIOPT Version :9

Sequence 1:NP_648548.1 Gene:Ir68b / 39378 FlyBaseID:FBgn0036250 Length:635 Species:Drosophila melanogaster
Sequence 2:NP_001106187.1 Gene:Grik3 / 298521 RGDID:71027 Length:919 Species:Rattus norvegicus


Alignment Length:659 Identity:113/659 - (17%)
Similarity:202/659 - (30%) Gaps:182/659 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 DYSALELDLYRCVGSRL----------PVITRNMEAHELEPFRRTDSLSIFQIPAAEKG--DSLV 102
            |..||:|:.||..|..|          |.::..:|...:|..:..        |.||.|  |.::
  Rat   263 DLYALDLEPYRYSGVNLTGFRILNVDNPHVSAIVEKWSMERLQAA--------PRAESGLLDGVM 319

  Fly   103 RRILDMLNP--------HQR---------RKHMHKYLFVWPNAGRHQLLRLFRGSWAKKLLYGLA 150
            .....:|..        :||         :.|.||   .|...||.... :....|  :.|.|..
  Rat   320 MTDAALLYDAVHIVSVCYQRAPQMTVNSLQCHRHK---AWRFGGRFMNF-IKEAQW--EGLTGRI 378

  Fly   151 ITGRENG---TFDFDPFA-----------WG---GLQVIQRLDGEVPYARKVKDLRGYPLRFSMF 198
            :..:.:|   .||.|..:           |.   ||.:.:...|..|........|.. :..::.
  Rat   379 VFNKTSGLRTDFDLDIISLKEDGLEKVGVWSPADGLNITEVAKGRGPNVTDSLTNRSL-IVTTLL 442

  Fly   199 TDPLMAMPRSPVETAGYQAVDGVAARVVGEM---LNASVTYVFPEDNESYGRCLPNGNYTGVVSD 260
            .:|.:...:|.....|....:|....::.|:   |..|......||.: ||.....|.:.|:|.:
  Rat   443 EEPFVMFRKSDRTLYGNDRFEGYCIDLLKELAHILGFSYEIRLVEDGK-YGAQDDKGQWNGMVKE 506

  Fly   261 IVGGHTHFAPNSRFVLDCIWPAVEVLYPYTRRNLHLVV-PASAIQPEYLIFVRVFRRTVWYLLLV 324
            ::......|.....:......|::...|:....:.::. ..:...|....|:......:|..:|:
  Rat   507 LIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSILYRKPNGTNPSVFSFLNPLSPDIWMYVLL 571

  Fly   325 TLLVVVLVFWVMQRLQRRIPRRGVIQFQATWYEILEMFGKTHVGEPAGRL--SSFSSMRTFLMG- 386
            ..|.|..|.:|:.|..           ...||:       .|...|...:  ::|:.:.:|..| 
  Rat   572 AYLGVSCVLFVIARFS-----------PYEWYD-------AHPCNPGSEVVENNFTLLNSFWFGM 618

  Fly   387 -----------------------WILFSYVLSTIYFAKLESGFVRPSYEEQVDRVDDLVHLDVHI 428
                                   |..|:.::.:.|.|.|.:.......|..:|..|||.......
  Rat   619 GSLMQQGSELMPKALSTRIIGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIE 683

  Fly   429 Y------AVTTMYDAVRSALTEHQYGLLENRSRQLPLGIATSYYQPVVRRRDRRAAFIMRDFHAR 487
            |      |..|.:...:.:..|..:..:.::    |..:..:..:.:.|......|.:|      
  Rat   684 YGAVKDGATMTFFKKSKISTFEKMWAFMSSK----PSALVKNNEEGIQRTLTADYALLM------ 738

  Fly   488 DFLAITYDSQ-----------AERPAYHIAREYLRSMICTYILPRGSPFLHRLESLYSGFLE--- 538
            :...|.|.:|           .:...|.|.            .|.|||:..::........|   
  Rat   739 ESTTIEYITQRNCNLTQIGGLIDSKGYGIG------------TPMGSPYRDKITIAILQLQEEDK 791

  Fly   539 -HGFFEHWRQMDLITRVGASPDAEEFLEDLGDQTDTDSGSNELAIRNKKV-VLTLDILQGAFYLW 601
             |...|.|      .|....|:.|                      ||:. .|.:..:.|.|.:.
  Rat   792 LHIMKEKW------WRGSGCPEEE----------------------NKEASALGIQKIGGIFIVL 828

  Fly   602 SVGIGISCL 610
            :.|:.:|.|
  Rat   829 AAGLVLSVL 837

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir68bNP_648548.1 Lig_chan 333..607 CDD:278489 49/321 (15%)
Grik3NP_001106187.1 PBP1_iGluR_Kainate_GluR5_7 34..417 CDD:107388 35/167 (21%)
ANF_receptor 55..398 CDD:279440 32/148 (22%)
PBP2_iGluR_Kainate_GluR7 433..801 CDD:270441 65/415 (16%)
Lig_chan 564..832 CDD:278489 53/335 (16%)
Glutamate binding 690..692 0/1 (0%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350190
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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