DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir68b and Gria2

DIOPT Version :9

Sequence 1:NP_648548.1 Gene:Ir68b / 39378 FlyBaseID:FBgn0036250 Length:635 Species:Drosophila melanogaster
Sequence 2:NP_001077280.1 Gene:Gria2 / 29627 RGDID:61862 Length:883 Species:Rattus norvegicus


Alignment Length:663 Identity:111/663 - (16%)
Similarity:217/663 - (32%) Gaps:211/663 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 SLSIFQIPAAEKGDSLVRRILDMLNPHQRRKH--MHKYLFVWPNAGRHQLLRLFRGSWAKKLLYG 148
            ::|.|||  .:..||||.:.::..:..:.:::  .|.....:.:|..:..:::...::.......
  Rat   256 NVSGFQI--VDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQR 318

  Fly   149 LAITGREN-GTFDFDP-FAWG-GLQV--------IQRLDGEVP---------YARKVKDLR---- 189
            :.|:.|.| |....:| ..|| |:::        ::.|.|.:.         |...:.:|:    
  Rat   319 IEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGP 383

  Fly   190 ---GYPLRFSMFTDPLMAMPRSPVETAGYQAVDGVAARVV----------GEMLNASVTYVFPED 241
               ||..........|..:| |..:|:|.:....|...::          .|||         |.
  Rat   384 RKIGYWSEVDKMVVTLTELP-SGNDTSGLENKTVVVTTILESPYVMMKKNHEML---------EG 438

  Fly   242 NESY-GRCLP-------------------NGNY----------TGVVSDIVGGHTHFAPNSRFVL 276
            ||.| |.|:.                   :|.|          .|:|.::|.|....|.....:.
  Rat   439 NERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTIT 503

  Fly   277 DCIWPAVEVLYPYTRRNLHLVV--PASAIQPEYLIFVRVFRRTVWYLLLVTLLVVVLVFWVMQRL 339
            ......::...|:....:.:::  |..: :|....|:......:|..::...:.|.:|.:::.|.
  Rat   504 LVREEVIDFSKPFMSLGISIMIKKPQKS-KPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRF 567

  Fly   340 QRRIPRRGVIQFQATWY-EILEMFGKTHVGEPAGRLSSFSSMRTFLMG----------------- 386
            .           ...|: |..|...:|...|.......|:|: .|.:|                 
  Rat   568 S-----------PYEWHTEEFEDGRETQSSESTNEFGIFNSL-WFSLGAFMRQGCDISPRSLSGR 620

  Fly   387 -----WILFSYVLSTIYFAKLESGFVRPSYEEQVDRVDDLVHLDVHIYAVTTMYDAVRSALTEHQ 446
                 |..|:.::.:.|.|.|.:..........::..:||                  |..||..
  Rat   621 IVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDL------------------SKQTEIA 667

  Fly   447 YGLLENRSRQLPLGIATSYYQPVVRRRDRRAAF-----IMRDFHARDFLAITYDSQAERPAYHIA 506
            ||.|::       |....::     ||.:.|.|     .||......|:..|        |..:|
  Rat   668 YGTLDS-------GSTKEFF-----RRSKIAVFDKMWTYMRSAEPSVFVRTT--------AEGVA 712

  Fly   507 REYLRSMICTYILPRGSPFLHRLESLYSGFLEHGFFEHWRQMDLITRVGASPDAEEF-------- 563
            |          :......:.:.|||..:.::|.      |:.....:||.:.|::.:        
  Rat   713 R----------VRKSKGKYAYLLESTMNEYIEQ------RKPCDTMKVGGNLDSKGYGIATPKGS 761

  Fly   564 ------------LEDLG-----------DQTDTDSGSNELAIRNKKVVLTLDILQGAFYLWSVGI 605
                        |.:.|           |:.:..||..:  .:.|...|:|..:.|.||:...|:
  Rat   762 SLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGD--SKEKTSALSLSNVAGVFYILVGGL 824

  Fly   606 GISCLGFAVEHAH 618
            |::.|...:|..:
  Rat   825 GLAMLVALIEFCY 837

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Ir68bNP_648548.1 Lig_chan 333..607 CDD:278489 55/332 (17%)
Gria2NP_001077280.1 PBP1_iGluR_AMPA_GluR2 28..397 CDD:107384 24/142 (17%)
ANF_receptor 56..379 CDD:279440 21/124 (17%)
PBP2_iGluR_AMPA 413..794 CDD:270433 70/456 (15%)
Glutamate binding 499..501 0/1 (0%)
Lig_chan 545..824 CDD:278489 57/346 (16%)