DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir68b and GRIA4

DIOPT Version :9

Sequence 1:NP_648548.1 Gene:Ir68b / 39378 FlyBaseID:FBgn0036250 Length:635 Species:Drosophila melanogaster
Sequence 2:NP_000820.4 Gene:GRIA4 / 2893 HGNCID:4574 Length:902 Species:Homo sapiens


Alignment Length:574 Identity:97/574 - (16%)
Similarity:182/574 - (31%) Gaps:195/574 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 WG-GLQV--------IQRLDGEVP---YARKVK------DLRGY-PLRFSMFTDPLMAMPRSPVE 211
            || |:.:        ||.|.|.|.   |.|:|.      :|:.. |.:...:.|....:....|.
Human   339 WGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDKLVLIQDVP 403

  Fly   212 TAGYQ--AVDGVAARVVGEMLNASVTY-----VFPEDNESY-GRC-------------------L 249
            |.|..  |::.....|...|.:..|.|     :| |.|:.| |.|                   :
Human   404 TLGNDTAAIENRTVVVTTIMESPYVMYKKNHEMF-EGNDKYEGYCVDLASEIAKHIGIKYKIAIV 467

  Fly   250 PNGNY----------TGVVSDIVGGHTHFAPNSRFVLDCIWPAVEVLYPYTRRNLHLVV--PASA 302
            |:|.|          .|:|.::|.|....|.....:.......::...|:....:.:::  |..:
Human   468 PDGKYGARDADTKIWNGMVGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKS 532

  Fly   303 IQPEYLIFVRVFRRTVWYLLLVTLLVVVLVFWVMQRLQRRIPRRGVIQFQATWYEILEMFGKTHV 367
             :|....|:......:|..::...:.|.:|.:::.|..           ...|:......||...
Human   533 -KPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFS-----------PYEWHTEEPEDGKEGP 585

  Fly   368 G-EPAGRLSSFSSMRTFLMG----------------------WILFSYVLSTIYFAKLESGFVRP 409
            . :|......|:|: .|.:|                      |..|:.::.:.|.|.|.:.....
Human   586 SDQPPNEFGIFNSL-WFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVE 649

  Fly   410 SYEEQVDRVDDLVHLDVHIYAVTTMYDAVRSALTEHQYGLLENRSRQLPLGIATSYYQPVVRRRD 474
            .....::..:||                  :..||..||.|::.|                    
Human   650 RMVSPIESAEDL------------------AKQTEIAYGTLDSGS-------------------- 676

  Fly   475 RRAAFIMRDFHARDFLAITYDSQAERPAYHIAREYLRS---MICTYILPRGSPFLHRLESLYSGF 536
                  .::|..|..:|:          |.....|:||   .:.|.....|...:.:.:..::..
Human   677 ------TKEFFRRSKIAV----------YEKMWTYMRSAEPSVFTRTTAEGVARVRKSKGKFAFL 725

  Fly   537 LE---HGFFEHWRQMDLITRVGASPDAE----------------------------------EFL 564
            ||   :.:.|..:..|.: :||.:.|::                                  ::.
Human   726 LESTMNEYIEQRKPCDTM-KVGGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKWW 789

  Fly   565 EDLGDQTDTDSGSNELAIRNKKVVLTLDILQGAFYLWSVGIGISCLGFAVEHAH 618
            .|.|:....||||     ::|...|:|..:.|.||:...|:|::.|...:|..:
Human   790 YDKGECGPKDSGS-----KDKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCY 838

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir68bNP_648548.1 Lig_chan 333..607 CDD:278489 51/336 (15%)
GRIA4NP_000820.4 PBP1_iGluR_AMPA_GluR4 28..398 CDD:107383 14/58 (24%)
PBP2_iGluR_AMPA_GluR4 414..795 CDD:270445 65/449 (14%)
Glutamate binding. /evidence=ECO:0000250 500..502 0/1 (0%)
Glutamate binding. /evidence=ECO:0000250 676..677 1/26 (4%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165156239
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.930

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