DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir68b and gria3a

DIOPT Version :9

Sequence 1:NP_648548.1 Gene:Ir68b / 39378 FlyBaseID:FBgn0036250 Length:635 Species:Drosophila melanogaster
Sequence 2:XP_005165152.1 Gene:gria3a / 170452 ZFINID:ZDB-GENE-020125-5 Length:903 Species:Danio rerio


Alignment Length:568 Identity:80/568 - (14%)
Similarity:173/568 - (30%) Gaps:183/568 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   157 GTFDFDPFAWGGLQVIQRLDGEVPYARKVKDLRGYPLRFSMFT---------------------- 199
            |...||.|.......:...:.:...|||:    ||...|..|.                      
Zfish   361 GNIQFDSFGRRSNYTVDVYEMKPGGARKI----GYWNEFEKFVYIVEQQVTNESSSVENRTIVVT 421

  Fly   200 ----DPLMAMPRSPVETAGYQAVDGVAARVVGEML-NASVTYVFP--EDNESYGRCLPNGNYTGV 257
                .|.:...|:.::..|....:|....:..|:. :..:.|...  .|.:...|......:.|:
Zfish   422 TIMEAPYVMYKRNYMQLEGNDRYEGYCVDLASEIAKHVGIKYKLSIVADGKYGARDPETKTWNGM 486

  Fly   258 VSDIVGGHTHFAPNSRFVLDCIWPAVEVLYPYTRRNLHLVV--PASAIQPEYLIFVRVFRRTVWY 320
            |.::|.|....|.....:.......::...|:....:.:::  |..: :|....|:......:|.
Zfish   487 VGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKS-KPGVFSFLDPLAYEIWM 550

  Fly   321 LLLVTLLVVVLVFWVMQRL-----------QRRIPRR--------GVIQFQATWYEI-------L 359
            .::...:.|.:|.:::.|.           :.:.|:.        |:  |.:.|:.:       .
Zfish   551 CIVFAYIGVSVVLFLVSRFSPYEWHLDDNEETKDPQTPPDPPNDFGI--FNSLWFSLGAFMQQGC 613

  Fly   360 EMFGKTHVGEPAGRLSSFSSMRTFLMGWILFSYVLSTIYFAKLESGFVRPSYEEQVDRVDDLVHL 424
            ::..::..|...|.:            |..|:.::.:.|.|.|.:..........::..:||   
Zfish   614 DISPRSLSGRIVGGV------------WWFFTLIIISSYTANLAAFLTVERMVSPIESAEDL--- 663

  Fly   425 DVHIYAVTTMYDAVRSALTEHQYGLLENRSRQLPLGIATSYYQPVVRRRDRRAAFIMRDFHARDF 489
                           :..||..||.|::.|                          .::|..|..
Zfish   664 ---------------AKQTEIAYGTLDSGS--------------------------TKEFFRRSK 687

  Fly   490 LAITYDSQAERPAYHIAREYLRS---MICTYILPRGSPFLHRLESLYSGFLE---HGFFEHWRQM 548
            :|:          |.....|::|   .:.....|.|...:.:.:..::..||   :.:.|..:..
Zfish   688 IAV----------YEKMWSYMKSAEPSVFVKTTPDGVARVRKSKGKFAFLLESTMNEYIEQRKPC 742

  Fly   549 DLITRVGASPDAE----------------------------------EFLEDLGDQTDTDSGSNE 579
            |.: :||.:.|::                                  ::..|.|:....|||| :
Zfish   743 DTM-KVGGNLDSKGYGVATPKGSALRTPVNLAVLKLSEQGILDKLKNKWWYDKGECGTKDSGS-K 805

  Fly   580 LAIRNKKVVLTLDI-----------LQGAFYLWSVGIGISCLGFAVEH 616
            :::.....||..:|           :.|..:.|.:.|..:|....:.|
Zfish   806 VSLLTHLTVLPTNISIYHKHHNEFPVAGFTFFWPLFILFTCAQAIMHH 853

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir68bNP_648548.1 Lig_chan 333..607 CDD:278489 47/350 (13%)
gria3aXP_005165152.1 PBP1_iGluR_AMPA_GluR3 28..399 CDD:107382 10/41 (24%)
ANF_receptor 39..382 CDD:279440 4/20 (20%)
PBP2_iGluR_AMPA 415..797 CDD:270433 57/451 (13%)
Lig_chan 547..810 CDD:278489 44/332 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591898
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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