DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir68b and Grik5

DIOPT Version :10

Sequence 1:NP_648548.1 Gene:Ir68b / 39378 FlyBaseID:FBgn0036250 Length:635 Species:Drosophila melanogaster
Sequence 2:XP_030098003.1 Gene:Grik5 / 14809 MGIID:95818 Length:1003 Species:Mus musculus


Alignment Length:489 Identity:98/489 - (20%)
Similarity:165/489 - (33%) Gaps:137/489 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   213 AGYQAVDGVAA---RVVGEMLNASVTYVFPEDNESYGRCLPNGNYTGVVSDI---------VGGH 265
            :|.:..:|...   |.:.|:|.........||. .||...|||::||:|.::         |...
Mouse   461 SGNERFEGFCVDMLRELAELLRFRYRLRLVEDG-LYGAPEPNGSWTGMVGELINRQKADLAVAAF 524

  Fly   266 THFAPNSRFVLDCIWP----AVEVLYPYTRRNLHLVVPASAIQPEYLIFVRVFRRTVWYLLLVTL 326
            |..|...: |:|...|    .:.:||     .:|:     ..:|.|..|:..|...||..:|:..
Mouse   525 TITAEREK-VIDFSKPFMTLGISILY-----RVHM-----GRKPGYFSFLDPFSPAVWLFMLLAY 578

  Fly   327 LVVVLVFWVMQRLQ-----------RRIPRRGVIQFQAT-----WYEILEMFGKTHVGEPAGRLS 375
            |.|..|.::..||.           |..|.  :::.|.|     |:.:            .|.:.
Mouse   579 LAVSCVLFLAARLSPYEWYNPHPCLRARPH--ILENQYTLGNSLWFPV------------GGFMQ 629

  Fly   376 SFS-------SMRTFLMGWILFSYVLSTIYFAKLESGFVRPSYEEQVDRVDDLV------HLDVH 427
            ..|       |.|.....|..|:.::.:.|.|.|.:.......|..|:..|||.      :..:|
Mouse   630 QGSEIMPRALSTRCVSGVWWAFTLIIISSYTANLAAFLTVQRMEVPVESADDLADQTNIEYGTIH 694

  Fly   428 IYAVTTMYDAVRSALTEHQYGLLENRSRQLPLGIATSYYQPVVRRRDRRAAFI----MRDFHARD 488
            ..:..|.:...|....:..:..::::.   |.....|..:.:.|..:.|.||:    |.::|.|.
Mouse   695 AGSTMTFFQNSRYQTYQRMWNYMQSKQ---PSVFVKSTEEGIARVLNSRYAFLLESTMNEYHRRL 756

  Fly   489 FLAIT-YDSQAERPAYHIAREYLRSMICTYILPRGSPFLHRLESLYSGFLEHGFFEHWRQMDLIT 552
            ...:| .....:...|.|.            :|.||||...:........|:      .:::::.
Mouse   757 NCNLTQIGGLLDTKGYGIG------------MPLGSPFRDEITLAILQLQEN------NRLEILK 803

  Fly   553 RV----GASPDAEEFLEDLGDQTDTDSGSNELAIRNKKVVLTLDILQGAFYLWSVGIGISCLGFA 613
            |.    |..|..|            |..:..|.:.|         :.|.|.:...|: |..:..|
Mouse   804 RKWWEGGRCPKEE------------DHRAKGLGMEN---------IGGIFVVLICGL-IIAVFVA 846

  Fly   614 VEHAHWFWRR--------------QTLRNAVEAR 633
            |....|..||              |.||:||..|
Mouse   847 VMEFIWSTRRSAESEEVSVCQEMLQELRHAVSCR 880

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir68bNP_648548.1 None
Grik5XP_030098003.1 PBP1_iGluR_Kainate_KA1_2 23..424 CDD:380616
Periplasmic_Binding_Protein_Type_2 437..808 CDD:473866 77/393 (20%)
Blue background indicates that the domain is not in the aligned region.

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