DRSC/TRiP Functional Genomics Resources

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Protein Alignment yps and Ybx1

DIOPT Version :10

Sequence 1:NP_524033.2 Gene:yps / 39377 FlyBaseID:FBgn0022959 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_001403655.1 Gene:Ybx1 / 500538 RGDID:61843 Length:326 Species:Rattus norvegicus


Alignment Length:374 Identity:136/374 - (36%)
Similarity:181/374 - (48%) Gaps:103/374 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 QPEQQQNPPNPQEQDHEQEPLDELQGQQGQ--------------PAPPTKEVIATKVTGTVKWFN 70
            :.|.||.|..|..   .....|...|..|.              ||...|:||||||.|||||||
  Rat     4 EAETQQPPAAPAA---ALSAADTKPGSTGSGAGSGGPGGLTSAAPAGGDKKVIATKVLGTVKWFN 65

  Fly    71 VKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEP 135
            |::||||||||||:|||||||:||.:|||:|.:|||||||.||||||.||||.||||||||.|.|
  Rat    66 VRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVP 130

  Fly   136 VRGSQFAADKRRNFRPWMKKNRRKDGEVEGEDAESSAQQQQQQAAPIVDGQPQQQVQSGPRQPRQ 200
            |:||::|||:....|...::...::.:...:::||..:.:..::||  :||.||         |:
  Rat   131 VQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNSESGEKNEGSESAP--EGQAQQ---------RR 184

  Fly   201 NFRRGPPGGPPGGPRGGPRGPPGGAPGGPRRYNNYYLRQP--RRGLGGGDGSAEPGVHDQNPEGL 263
            .:||                         ||:..||:|:|  ||     ...:.|.|..:..|| 
  Rat   185 PYRR-------------------------RRFPPYYMRRPYARR-----PQYSNPPVQGEVMEG- 218

  Fly   264 QRGEGQGPRRGGGPPGGPQR----RFFRRNFNN----GPP---PPRRDG--------GEYIQGQG 309
                  ...:|.|..|.|.|    |.:|..|.:    |||   .||.||        |:..|||.
  Rat   219 ------ADNQGAGEQGRPVRQNMYRGYRPRFRSVHFRGPPRQRQPREDGNEEDKENQGDETQGQQ 277

  Fly   310 PP-------------RPQQPRPR--RQRKPNGPGGGSEQQP--EKNGAQ 341
            ||             ||:.|:|:  ::.|...|...:...|  |:.||:
  Rat   278 PPQRRYRRNFNYRRRRPENPKPQDGKETKAADPPAENSSAPEAEQGGAE 326

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ypsNP_524033.2 CSD 62..131 CDD:278729 55/68 (81%)
Ybx1NP_001403655.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..47 9/45 (20%)
Interaction with ss-DNA. /evidence=ECO:0000250|UniProtKB:P67809 14..69 21/57 (37%)
CSD 57..126 CDD:278729 55/68 (81%)
C5-methylcytosine binding. /evidence=ECO:0000250|UniProtKB:P67809 63..68 4/4 (100%)

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