DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment yps and Lin28b

DIOPT Version :10

Sequence 1:NP_524033.2 Gene:yps / 39377 FlyBaseID:FBgn0022959 Length:352 Species:Drosophila melanogaster
Sequence 2:XP_011241482.1 Gene:Lin28b / 380669 MGIID:3584032 Length:303 Species:Mus musculus


Alignment Length:165 Identity:53/165 - (32%)
Similarity:69/165 - (41%) Gaps:35/165 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 QQAQQQPEQQQNPPNPQEQDHEQEPL-----DELQGQQGQPAPPTKEVIATKVTGTVKWFNVKSG 74
            |:..:...|..:.|....:..|.|.|     ||.|...|              ||..|||||:.|
Mouse    22 QKMMRSFNQGSSAPGGASKGEEPEKLPGLAEDEPQVLHG--------------TGHCKWFNVRMG 72

  Fly    75 YGFI-------NRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPS 132
            :|||       |..|...|||||||.:.    .:..||:.:||.|||......||.|:..||||.
Mouse    73 FGFISMISREGNPLDIPVDVFVHQSKLF----MEGFRSLKEGEPVEFTFKKSPKGLESIRVTGPG 133

  Fly   133 GEPVRGSQFAADKRRNFRPWMKKNRRKDGEVEGED 167
            |.|..||:     ||.....::|.:.|......:|
Mouse   134 GSPCLGSE-----RRPKGKTLQKRKPKGDRWRRQD 163

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ypsNP_524033.2 CSD 62..131 CDD:278729 32/75 (43%)
Lin28bXP_011241482.1 CSP_CDS 61..131 CDD:239905 31/73 (42%)
PTZ00368 <183..219 CDD:173561
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.