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Protein Alignment yps and Lin28b
DIOPT Version :9
Sequence 1: | NP_524033.2 |
Gene: | yps / 39377 |
FlyBaseID: | FBgn0022959 |
Length: | 352 |
Species: | Drosophila melanogaster |
Sequence 2: | XP_011241482.1 |
Gene: | Lin28b / 380669 |
MGIID: | 3584032 |
Length: | 303 |
Species: | Mus musculus |
Alignment Length: | 165 |
Identity: | 53/165 - (32%) |
Similarity: | 69/165 - (41%) |
Gaps: | 35/165 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 15 QQAQQQPEQQQNPPNPQEQDHEQEPL-----DELQGQQGQPAPPTKEVIATKVTGTVKWFNVKSG 74
|:..:...|..:.|....:..|.|.| ||.|...| ||..|||||:.|
Mouse 22 QKMMRSFNQGSSAPGGASKGEEPEKLPGLAEDEPQVLHG--------------TGHCKWFNVRMG 72
Fly 75 YGFI-------NRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPS 132
:||| |..|...|||||||.:. .:..||:.:||.|||......||.|:..||||.
Mouse 73 FGFISMISREGNPLDIPVDVFVHQSKLF----MEGFRSLKEGEPVEFTFKKSPKGLESIRVTGPG 133
Fly 133 GEPVRGSQFAADKRRNFRPWMKKNRRKDGEVEGED 167
|.|..||: ||.....::|.:.|......:|
Mouse 134 GSPCLGSE-----RRPKGKTLQKRKPKGDRWRRQD 163
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
yps | NP_524033.2 |
CSD |
62..131 |
CDD:278729 |
32/75 (43%) |
Lin28b | XP_011241482.1 |
CSP_CDS |
61..131 |
CDD:239905 |
31/73 (42%) |
PTZ00368 |
<183..219 |
CDD:173561 |
|
Blue background indicates that the domain is not in
the aligned region.
|
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG1278 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
1 |
1.010 |
- |
- |
|
D1604809at2759 |
OrthoFinder |
1 |
1.000 |
- |
- |
|
FOG0000228 |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
4 | 3.820 |
|
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