Protein Alignment yps and lin-28

DIOPT Version :9

• Sequence 1: NP_524033.2
• Gene: yps / 39377
• FlyBaseID: FBgn0022959
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: NP_001021085.1
• Gene: lin-28 / 172626
• WormBaseID: WBGene00003014
• Length: 227
• Species: Caenorhabditis elegans
• Alignment Length: 211
• Identity: 57/211 - (27%)
• Similarity: 91/211 - (43%)
• Gaps: 69/211 - (32%)

  Fly    26 NPPNPQEQDHEQEP------LDE---LQGQQGQPAPPTKEVIATKVTGTVKWFNVKSGYGFINRN 81
            |..:||::..::.|      |.|   :...:..|:|      ..:..|:.|||||..||||:..:
 Worm    14 NRYSPQDEVEDRLPDVVDNRLTENMRVPSFERLPSP------TPRYFGSCKWFNVSKGYGFVIDD 72

  Fly    82 DTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGE----KGNEAANVTGP-SGEPVRGS-- 139
            .|.||:|||||    |...:..||:.:||.|.:  .|.|    ||.||..|:|. .|:.::||
 Worm    73 ITGEDLFVHQS----NLNMQGFRSLDEGERVSY--YIQERSNGKGREAYAVSGEVEGQGLKGSRI 131

  Fly   140 -----------------QFAADKRRNFRPWMK--------------------KNRRK--DGEVEG 165
                             :||..|.::. |.:|                    :.|||  ..:|..
 Worm   132 HPLGRKKAVSLRCFRCGKFATHKAKSC-PNVKTDAKVCYTCGSEEHVSSICPERRRKHRPEQVAA 195

  Fly   166 EDAESSAQQQQQQAAP 181
            |:|| :|:...::::|
 Worm   196 EEAE-AARMAAEKSSP 210

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
yps	NP_524033.2	CSD	62..131	CDD:278729	31/72 (43%)
lin-28	NP_001021085.1	CSD	55..119	CDD:278729	31/69 (45%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1604809at2759
OrthoFinder	1	1.000	-	-		FOG0000228
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	4	3.920