DRSC/TRiP Functional Genomics Resources

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Protein Alignment yps and lin28b

DIOPT Version :9

Sequence 1:NP_524033.2 Gene:yps / 39377 FlyBaseID:FBgn0022959 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_001135490.1 Gene:lin28b / 100216028 XenbaseID:XB-GENE-1218969 Length:253 Species:Xenopus tropicalis


Alignment Length:268 Identity:66/268 - (24%)
Similarity:99/268 - (36%) Gaps:108/268 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 AEQQQAQQQPEQQQNPPNPQEQDHEQEPLDELQGQQGQPAPPTKEVIATKVTGTVKWFNVKSGYG 76
            ||...|:...|:|...|. ||::.|::| ..|:|                 :|..|||||:.|:|
 Frog     2 AEGGAARGTREEQGKLPE-QEEEEEEDP-QVLRG-----------------SGHCKWFNVRMGFG 47

  Fly    77 FINRNDTRE--------DVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSG 133
            ||:.. :||        |||||||.:.    .:..||:.:||.|||......||.|:..||||.|
 Frog    48 FISMT-SREGSPLENPVDVFVHQSKLY----MEGFRSLKEGEPVEFTFKKSSKGFESLRVTGPGG 107

  Fly   134 EPVRGSQ-----FAADKRR-------------------NFRPWMKK------------------- 155
            .|..|::     ....||:                   |..|..||                   
 Frog   108 NPCLGNERRPKGKTVQKRKPKGDRCYNCGGLDHHAKECNLPPQPKKCHYCQSIMHMVANCPHKIV 172

  Fly   156 --------------------NRRKDGEV-----------EG--EDAESSAQQQQQQAAPIVDGQP 187
                                :.:::|.|           ||  |.:|.|::..|:.:...:...|
 Frog   173 PQHPTTSQGRYEAEPQPSTSSFQREGGVAFGYSSPSYSQEGRSELSERSSRSPQEASLSKISTSP 237

  Fly   188 QQQVQSGP 195
            ::|.:.||
 Frog   238 EEQSRKGP 245

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ypsNP_524033.2 CSD 62..131 CDD:278729 31/76 (41%)
lin28bNP_001135490.1 CSP_CDS 35..104 CDD:239905 30/73 (41%)
PTZ00368 <123..168 CDD:173561 6/44 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1604809at2759
OrthoFinder 1 1.000 - - FOG0000228
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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