DRSC/TRiP Functional Genomics Resources

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Protein Alignment ssp and AT5G05550

DIOPT Version :9

Sequence 1:NP_648546.1 Gene:ssp / 39375 FlyBaseID:FBgn0036248 Length:368 Species:Drosophila melanogaster
Sequence 2:NP_850774.1 Gene:AT5G05550 / 830438 AraportID:AT5G05550 Length:249 Species:Arabidopsis thaliana


Alignment Length:270 Identity:60/270 - (22%)
Similarity:97/270 - (35%) Gaps:80/270 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 HPPKLDDSLERRLSWNSFQPSEWSFHAVELLLELWARHCVDLRDSRKRVQVIWKMTGEM------ 157
            |.|.|.     |..|       ||..|...|:|.|....|.|.....| |..||...:.      
plant    14 HRPPLG-----REDW-------WSEEATATLVEAWGNRYVKLNHGNLR-QNDWKDVADAVNSRHG 65

  Fly   158 -KSLGFTFTEIKNKIDDMGQQYRRESHMEKTTGHKSQWEYFETMKMIF-----SSDRNIIDNMP- 215
             .|...|..:.||::|.:.::|:    .||.....|.|.::..:.::.     .|...::.:.| 
plant    66 DNSRKKTDLQCKNRVDTLKKKYK----TEKAKLSPSTWRFYNRLDVLIGPVVKKSAGGVVKSAPF 126

  Fly   216 ---LDKSGSAPNTTSEHNSFGSQLDEPLIDRNYLRSQKVHPGEGDSFDMNEYAD-----EAQEDV 272
               |:.:||        ||.||.|                  |.|..|.:|..|     .....|
plant   127 KNHLNPTGS--------NSTGSSL------------------EDDDEDDDEVGDWEFVARKHPRV 165

  Fly   273 DELRILKDNIIREIEESSTVHSQENYED----------ELDQQNSKTEDMKIAKRQRAARIMEIE 327
            :|:.:.:.:..||: .::.:...|.||.          ||::|.     |::.|.....|:..:.
plant   166 EEVDLSEGSTCREL-ATAILKFGEVYERIEGKKQQMMIELEKQR-----MEVTKEVELKRMNMLM 224

  Fly   328 EEKLVIERKK 337
            |.:|.||:.|
plant   225 EMQLEIEKSK 234

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sspNP_648546.1 Myb_DNA-bind_4 120..198 CDD:290549 22/84 (26%)
AT5G05550NP_850774.1 Myb_DNA-bind_4 21..104 CDD:290549 23/94 (24%)
SPFH_like <190..>234 CDD:302763 12/48 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 49 1.000 Inparanoid score I2640
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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