DRSC/TRiP Functional Genomics Resources

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Protein Alignment rols and AT1G05640

DIOPT Version :9

Sequence 1:NP_729778.1 Gene:rols / 39368 FlyBaseID:FBgn0041096 Length:1900 Species:Drosophila melanogaster
Sequence 2:NP_172055.1 Gene:AT1G05640 / 837070 AraportID:AT1G05640 Length:627 Species:Arabidopsis thaliana


Alignment Length:370 Identity:99/370 - (26%)
Similarity:144/370 - (38%) Gaps:62/370 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly  1236 MQRFKLLDGFLIKRLDNTYMFFHSSLREWLMRRDEGESNKFLCD-------------ARLGHAGI 1287
            |:|.:...||:.|:..     |...:...|...:.|...|...|             ||.|:.|.
plant    69 MERQRSFRGFVEKQKS-----FRVVMERQLSFMNVGGERKKKTDSPGKRGDSPLHLAARTGNLGK 128

  Fly  1288 AFRLSRLQAPLSPQLTLELGHHMLKAHLYGGTSLTLLSPRDLQSYWLAGAADNISSSLGALRNVY 1352
            ...|.|....:.     ||.....|.:|.|.|.             |..||:| ..||.....:.
plant   129 VMELIRACNGIE-----ELKELSSKQNLEGETP-------------LYSAAEN-GHSLVVEEMLK 174

  Fly  1353 SPNLKVSRLVLLAGASPNHRTDYMGGAPILCIAAHEGILPMVSLLLEFGADVGLTNSQGC-TPLI 1416
            ..:|..:.:....|..|.|            :||.:|.:..:..|||...::.:|....| |.|.
plant   175 HMDLDTASVKARNGFDPFH------------VAAKQGHIEALKKLLETFPNLAMTVDLSCTTALH 227

  Fly  1417 LAAMRGHCDVVRPLVAAGSSLGQLDITQ-RCALVHAARMGHLSVVKYLLACDWSPRPHSQDVTRS 1480
            .||.:||.|||..|:...|.|.::.... :.||..||||||..|||.|:..|.| .....|....
plant   228 TAASQGHTDVVNLLLKTDSHLAKIAKNNGKTALHSAARMGHREVVKSLIGNDAS-IGFRTDKKGQ 291

  Fly  1481 VALQQALIGAAAQAHCKILEDLLDLNETEFDLDVNGMEPSSGELALTAAARHGCIDVVGILLS-R 1544
            .||..|:.|.         .:.:.|...:.|..:..:|.|.|...|..|...|.|.:|..|:| .
plant   292 TALHMAVKGQ---------NEGIVLELVKPDPAILSVEDSKGNTPLHTATNKGRIKIVRCLVSFD 347

  Fly  1545 GAQIDARNRQGYSALWLAVKEGHWSVVEHLLQRGALLDEPLGQTR 1589
            |..::|.|:.|.:||.:|.|.|:..:|..|.:.||...:.||:.|
plant   348 GINLNAMNKAGDTALDIAEKIGNPELVSVLKEAGAATAKDLGKPR 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rolsNP_729778.1 zf-RING_5 327..364 CDD:291308
Ank_5 1363..1418 CDD:290568 13/55 (24%)
ANK 1378..1503 CDD:238125 39/126 (31%)
ANK repeat 1382..1408 CDD:293786 6/25 (24%)
ANK repeat 1410..1441 CDD:293786 13/31 (42%)
Ank_2 1415..1552 CDD:289560 44/138 (32%)
ANK 1486..1609 CDD:238125 30/105 (29%)
ANK repeat 1486..1518 CDD:293786 4/31 (13%)
ANK repeat 1521..1552 CDD:293786 10/31 (32%)
Ank_2 1526..1619 CDD:289560 23/65 (35%)
ANK 1549..1675 CDD:238125 15/41 (37%)
ANK repeat 1554..1586 CDD:293786 10/31 (32%)
ANK repeat 1591..1619 CDD:293786
Ank_2 1593..1685 CDD:289560
ANK repeat 1621..1652 CDD:293786
ANK repeat 1654..1685 CDD:293786
Ank_2 1659..1735 CDD:289560
ANK repeat 1687..1712 CDD:293786
TPR_11 1736..1812 CDD:290150
TPR repeat 1736..1768 CDD:276809
TPR repeat 1773..1810 CDD:276809
TPR_11 1783..1843 CDD:290150
TPR repeat 1815..1843 CDD:276809
AT1G05640NP_172055.1 ANK repeat 112..150 CDD:293786 9/42 (21%)
Ank_2 117..209 CDD:403870 26/122 (21%)
ANK repeat 152..185 CDD:293786 9/46 (20%)
ANK repeat 187..219 CDD:293786 10/43 (23%)
ANKYR 191..413 CDD:223738 69/224 (31%)
Ank_2 192..285 CDD:403870 35/105 (33%)
ANK repeat 221..253 CDD:293786 13/31 (42%)
ANK repeat 255..287 CDD:293786 14/32 (44%)
ANK repeat 289..321 CDD:293786 6/40 (15%)
ANK repeat 323..355 CDD:293786 10/31 (32%)
PGG 435..550 CDD:404788
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm1009
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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