DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pop2 and POP2

DIOPT Version :9

Sequence 1:NP_001287041.1 Gene:Pop2 / 39366 FlyBaseID:FBgn0036239 Length:361 Species:Drosophila melanogaster
Sequence 2:NP_014450.3 Gene:POP2 / 855788 SGDID:S000005335 Length:433 Species:Saccharomyces cerevisiae


Alignment Length:272 Identity:102/272 - (37%)
Similarity:160/272 - (58%) Gaps:21/272 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 PHAHIPSNEECGIRDVWKQNLEEEFRTIRKVVQKYHYVAMDTEFPGVVARPVGEFRSTADYHYQL 77
            |...:|......:|||||.||..||..||::|.:|::|::.|||.|.:|||:|.|||..|||||.
Yeast   148 PPIFLPPPNYLFVRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQT 212

  Fly    78 LRCNVDLLRIIQLGLTFMDDDGKTPP-GYSTWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEE 141
            :|.|||.|..|||||:..|.:|..|. |.|||||||:|:..:::.:.:|::||:.|||.|:|||.
Yeast   213 MRANVDFLNPIQLGLSLSDANGNKPDNGPSTWQFNFEFDPKKEIMSTESLELLRKSGINFEKHEN 277

  Fly   142 DGIDPIDFAELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLHIYFPNIF 206
            .|||..:|::|||.||:::.:::.|:.:|:.||.|:|:.:|.:.::|.::.:|...:|.|.||.:
Yeast   278 LGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYMPNFY 342

  Fly   207 DIKYLMKSCKNLKG---------------GLQEVADQLELRRVGPQHQAGSDALLTGMAF----- 251
            |:..:.|..:..|.               .|..:||:|.|.|.......|..:||..::|     
Yeast   343 DLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQSLLMLLSFCQLSK 407

  Fly   252 FKMREVQHTNDF 263
            ..|.:..:..||
Yeast   408 LSMHKFPNGTDF 419

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pop2NP_001287041.1 CAF1 25..257 CDD:304961 98/252 (39%)
POP2NP_014450.3 POP2 141..433 CDD:227553 102/272 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157346439
Domainoid 1 1.000 132 1.000 Domainoid score I1117
eggNOG 1 0.900 - - E1_COG5228
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 202 1.000 Inparanoid score I849
Isobase 1 0.950 - 0 Normalized mean entropy S870
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001271
OrthoInspector 1 1.000 - - oto99287
orthoMCL 1 0.900 - - OOG6_101138
Panther 1 1.100 - - LDO PTHR10797
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R161
SonicParanoid 1 1.000 - - X785
TreeFam 1 0.960 - -
1413.730

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